Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,469,589 – 16,469,749 |
Length | 160 |
Max. P | 0.979030 |
Location | 16,469,589 – 16,469,709 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -39.47 |
Consensus MFE | -36.77 |
Energy contribution | -37.10 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.86 |
Structure conservation index | 0.93 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.748461 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16469589 120 + 22224390 UUUGGCCCAAAACGAUGCAAACGAUGCAGCCGAUGCAACGCGACGCCUGCAACUGACAAACGGCGGCAUCAGCCACUGUGCGUUCGUUUUAGUUCGCUUUUCGUUUUCGUUUUGGUUUUU ......(((((((((...((((((((((.....))))..((((...(((.(((.(((..((((.(((....))).))))..))).))).))).))))...)))))))))))))))..... ( -40.60) >DroSec_CAF1 7611 113 + 1 UUUGGCCCAAAACGAUGCAAACGAUGCAGCCGAUGCAACGCGACGCCUGCAACUGACAAACGGCGGCAUCAGCCACUGUGCGUUCGUUUCAGUUCGCUUUUCGUUUUGGUUUU------- ......(((((((((.((.(((..(((((.((.(((...))).)).)))))((.(((..((((.(((....))).))))..))).))....))).))...)))))))))....------- ( -38.90) >DroSim_CAF1 4898 120 + 1 UUUGGCCCAAAACGAUGCAAACGAUGCAGCCGAUGCAACGCGACGCCUGCAACUGACAAACGGCGGCAUCAGCCACUGUGCGUUCGUUUCAGUUCGCUUUUCGUUUUGGUUUUGGUUUUU ......(((((((((.((.(((..(((((.((.(((...))).)).)))))((.(((..((((.(((....))).))))..))).))....))).))...)))))))))........... ( -38.90) >consensus UUUGGCCCAAAACGAUGCAAACGAUGCAGCCGAUGCAACGCGACGCCUGCAACUGACAAACGGCGGCAUCAGCCACUGUGCGUUCGUUUCAGUUCGCUUUUCGUUUUGGUUUUGGUUUUU ......(((((((((.((.(((..(((((.((.(((...))).)).)))))((.(((..((((.(((....))).))))..))).))....))).))...)))))))))........... (-36.77 = -37.10 + 0.33)
Location | 16,469,589 – 16,469,709 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.00 |
Mean single sequence MFE | -47.63 |
Consensus MFE | -44.37 |
Energy contribution | -45.03 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.00 |
Mean z-score | -4.27 |
Structure conservation index | 0.93 |
SVM decision value | 1.83 |
SVM RNA-class probability | 0.979030 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16469589 120 - 22224390 AAAAACCAAAACGAAAACGAAAAGCGAACUAAAACGAACGCACAGUGGCUGAUGCCGCCGUUUGUCAGUUGCAGGCGUCGCGUUGCAUCGGCUGCAUCGUUUGCAUCGUUUUGGGCCAAA .....(((((((((((((((...(((..(......)..)))...(..((((((((((((((((((.....)))))))..)))..))))))))..).))))))...)))))))))...... ( -47.10) >DroSec_CAF1 7611 113 - 1 -------AAAACCAAAACGAAAAGCGAACUGAAACGAACGCACAGUGGCUGAUGCCGCCGUUUGUCAGUUGCAGGCGUCGCGUUGCAUCGGCUGCAUCGUUUGCAUCGUUUUGGGCCAAA -------....(((((((((.(((((((((((..((((((....(((((....))))))))))))))))(((((.((..((...))..)).)))))))))))...)))))))))...... ( -47.90) >DroSim_CAF1 4898 120 - 1 AAAAACCAAAACCAAAACGAAAAGCGAACUGAAACGAACGCACAGUGGCUGAUGCCGCCGUUUGUCAGUUGCAGGCGUCGCGUUGCAUCGGCUGCAUCGUUUGCAUCGUUUUGGGCCAAA ...........(((((((((.(((((((((((..((((((....(((((....))))))))))))))))(((((.((..((...))..)).)))))))))))...)))))))))...... ( -47.90) >consensus AAAAACCAAAACCAAAACGAAAAGCGAACUGAAACGAACGCACAGUGGCUGAUGCCGCCGUUUGUCAGUUGCAGGCGUCGCGUUGCAUCGGCUGCAUCGUUUGCAUCGUUUUGGGCCAAA ...........(((((((((.((((((((((..(((((((....(((((....))))))))))))))))(((((.((..((...))..)).)))))))))))...)))))))))...... (-44.37 = -45.03 + 0.67)
Location | 16,469,629 – 16,469,749 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.83 |
Mean single sequence MFE | -24.19 |
Consensus MFE | -23.40 |
Energy contribution | -23.73 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.22 |
Structure conservation index | 0.97 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.628271 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16469629 120 - 22224390 CCAUUUUCGCAUUAAAAUUUGUAACCAAACCAAAAAGAAAAAAAACCAAAACGAAAACGAAAAGCGAACUAAAACGAACGCACAGUGGCUGAUGCCGCCGUUUGUCAGUUGCAGGCGUCG .....(((((.......((((....))))......................((....))....)))))......(((.(((...(..(((((((........)))))))..)..)))))) ( -22.70) >DroSec_CAF1 7651 104 - 1 CCAUUUUCGCAUUAAAAUUUGUAACCAAACC----------------AAAACCAAAACGAAAAGCGAACUGAAACGAACGCACAGUGGCUGAUGCCGCCGUUUGUCAGUUGCAGGCGUCG ((.((((((........((((.........)----------------))).......))))))((.((((((..((((((....(((((....))))))))))))))))))).))..... ( -25.06) >DroSim_CAF1 4938 114 - 1 CCAUUUUCGCAUUAAAAUUUGUAACCAAACCAAA------AAAAACCAAAACCAAAACGAAAAGCGAACUGAAACGAACGCACAGUGGCUGAUGCCGCCGUUUGUCAGUUGCAGGCGUCG .......(((.......((((....)))).....------.......................((.((((((..((((((....(((((....)))))))))))))))))))..)))... ( -24.80) >consensus CCAUUUUCGCAUUAAAAUUUGUAACCAAACCAAA______AAAAACCAAAACCAAAACGAAAAGCGAACUGAAACGAACGCACAGUGGCUGAUGCCGCCGUUUGUCAGUUGCAGGCGUCG .......(((.......((((....))))..................................((.(((((..(((((((....(((((....)))))))))))))))))))..)))... (-23.40 = -23.73 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:18:00 2006