| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,469,208 – 16,469,309 |
| Length | 101 |
| Max. P | 0.677521 |
| Location | 16,469,208 – 16,469,309 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 90.30 |
| Mean single sequence MFE | -32.37 |
| Consensus MFE | -24.61 |
| Energy contribution | -25.33 |
| Covariance contribution | 0.73 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.677521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16469208 101 - 22224390 CCC--CACUC-----GGUAUCUGCUGUAAGCAGUCAUAAGCGAAGCAAACGUUAAGGCAUUUGCGUACUAA---CAAUGGCCAAUUGCAAUGCGCAUUUGGUUAUAAAAGC ...--.....-----(((((((((.....))))...........(((((.((....)).))))))))))..---..((((((((.(((.....))).))))))))...... ( -24.90) >DroSec_CAF1 7225 108 - 1 CCCACCACUCCGGUGGGUAUCUGUUGUAAGCAGUCAUAAGCG---CAAACGUUAAGGCAUUUGCGUACUAACAACAAUGGCCCAUUGCAAUGCGCAUUUGGUCAUAAAAGC ((((((.....))))))....((((((....(((.....(((---((((.((....)).)))))))))).))))))((((((...(((.....)))...))))))...... ( -34.20) >DroSim_CAF1 4518 108 - 1 CCCACCACUCCGGUGGGUAUCUGUUGUAAGCAGUCAUAAGCG---CAAACGUUAAGGCAUUUGCGUACUAACAACAAUGGCCAAUUGCAAUGCGCAUUUGGUCAUAAAAGC ((((((.....))))))....((((((....(((.....(((---((((.((....)).)))))))))).))))))((((((((.(((.....))).))))))))...... ( -38.00) >consensus CCCACCACUCCGGUGGGUAUCUGUUGUAAGCAGUCAUAAGCG___CAAACGUUAAGGCAUUUGCGUACUAACAACAAUGGCCAAUUGCAAUGCGCAUUUGGUCAUAAAAGC ((((((.....))))))...((((.....))))......((.......((((.((....)).))))..........((((((((.(((.....))).))))))))....)) (-24.61 = -25.33 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:57 2006