Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 305,785 – 305,901 |
Length | 116 |
Max. P | 0.583508 |
Location | 305,785 – 305,901 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 87.79 |
Mean single sequence MFE | -27.81 |
Consensus MFE | -19.59 |
Energy contribution | -19.90 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.17 |
Mean z-score | -1.60 |
Structure conservation index | 0.70 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.583508 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 305785 116 + 22224390 UAUCAAUUACAGAAAUUUUAUUACCCAGAGCAACGCCGAGUUGCAGUGGAACAUGGUAUCAAGCUAUUAGGCCGUCUAACGUAUUUUACGCCCUAUAGGGGCAAAUGUAGAUAUAA ......(((((..................(((((.....))))).((((((.(((.......(((....))).......))).))))))((((.....))))...)))))...... ( -25.24) >DroSec_CAF1 48826 116 + 1 UAUCAAUUACAGAAAUGUUAUUACCAAGAGCAACGUCCACUUGAAGUGGACCUUGGUAUCAAGCUAUUAGGCCGUCUAACGUACAUUGCGUCCUAUAAGGGCAAAUGUAGAUAUAA ((((..........((((((.(((((((......((((((.....)))))))))))))....(((....)))....))))))(((((..((((.....)))).))))).))))... ( -31.70) >DroSim_CAF1 69485 116 + 1 UAUCAAUUACAGAAAUGUUAUUACCAAGAGCAACGUCCACUUGCAGUGGACCUUGGUAUCCAGCUAUUAGGCCGUCUAACGUACAUUGCGUCCUAUAAGGGCAAAUGUAGAUAUAA ((((..........((((((.(((((((......((((((.....)))))))))))))....(((....)))....))))))(((((..((((.....)))).))))).))))... ( -31.70) >DroEre_CAF1 49570 116 + 1 UAUCAAUUACAGAAAUUUCAUUACCGAGAGCUACGUCGAUUUACAGUGGAAUAUGGUACCAAGCUAUUAAGCCGUCUAACAUCCAUUACGCCCUAAGAGGGCAAAUGUAGAUAUUA ...............((((......)))).((((((........((((((...(((.((...(((....))).)))))...))))))..((((.....))))..))))))...... ( -22.60) >consensus UAUCAAUUACAGAAAUGUUAUUACCAAGAGCAACGUCCACUUGCAGUGGAACAUGGUAUCAAGCUAUUAGGCCGUCUAACGUACAUUACGCCCUAUAAGGGCAAAUGUAGAUAUAA ((((......(((........(((((((..(.((...........)).)..)))))))....(((....)))..)))....((((((..((((.....)))).))))))))))... (-19.59 = -19.90 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:49 2006