| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,468,321 – 16,468,425 |
| Length | 104 |
| Max. P | 0.843983 |
| Location | 16,468,321 – 16,468,425 |
|---|---|
| Length | 104 |
| Sequences | 3 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 88.70 |
| Mean single sequence MFE | -24.53 |
| Consensus MFE | -18.05 |
| Energy contribution | -22.05 |
| Covariance contribution | 4.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.99 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.843983 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16468321 104 - 22224390 GAGAAAUUCCAUUUGAAAGAGCGCUUUUCCCAUGCUCUAGUAACCUCGUAUGCAAAUACCUAAUUGUUAUAAUUAAUUUUCUA--------------UAUAUUUACAUUCGCAAGAUU .(((((...........((((((.........)))))).(((((...((((....))))......))))).......))))).--------------...........((....)).. ( -13.30) >DroSec_CAF1 6356 118 - 1 GAGAAAUUCCAUUUGAAAGAGCGCUUUUCCCAUGCUCUAGUAACCUCGUAUGCAAAUACCUAAUUGUUAUAAUUAAUUUUCUUAUUGUAGCAUUUUCUAUAUUUGCAUACGCCAGAUA ..........(((((..((((((.........))))))........((((((((((((...((.(((((((((..........))))))))).))....)))))))))))).))))). ( -28.80) >DroSim_CAF1 3252 118 - 1 GAGAAAUUCCAUUUGAAAGAGCUCUUUUCCCAUGCUCUAGUAACCUCGUAUGCAAAUACCUAAUUGUUAUAAUUAAUUUUCUAAUUGUAGCAUUUUCUAUAUUUGCAUACGCCAGAUU ..........(((((..(((((...........)))))........((((((((((((...((.(((((((((((......))))))))))).))....)))))))))))).))))). ( -31.50) >consensus GAGAAAUUCCAUUUGAAAGAGCGCUUUUCCCAUGCUCUAGUAACCUCGUAUGCAAAUACCUAAUUGUUAUAAUUAAUUUUCUAAUUGUAGCAUUUUCUAUAUUUGCAUACGCCAGAUU (((...(((.....)))(((((...........)))))......)))(((((((((((......(((((((((((......))))))))))).......)))))))))))........ (-18.05 = -22.05 + 4.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:56 2006