Locus 6597

Sequence ID X_DroMel_CAF1
Location 16,466,960 – 16,467,080
Length 120
Max. P 0.654445
window10777 window10778

overview

Window 7

Location 16,466,960 – 16,467,080
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 80.72
Mean single sequence MFE -20.70
Consensus MFE -17.59
Energy contribution -18.26
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.22
Structure conservation index 0.85
SVM decision value 0.25
SVM RNA-class probability 0.654445
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16466960 120 + 22224390
UUUGAUUGUUCAACUGGUUCCUCACCGCUUGGUCGUCAUGCAAAUCGCUCGCAUAAACAAACAAACAAAUAACGAACAAAUCAAAUAAAAUGAAACUGGGAAAACGAGGAGGAACUAUGA
.((((....)))).(((((((((..((((..((..((((((.....)).........................((.....)).......)))).))..))....))..)))))))))... ( -23.30)
>DroSec_CAF1 5099 92 + 1
UUUGAUUGUUCAACUGGUUCCUCACCGUUUGGUCGUCAUGCAAGU----------------------------AAACAAAUCAAAUAAAAUGAAACUGGGAAAACGAGGAGGAACUAUGA
.((((....)))).(((((((((..(((((..(((((((......----------------------------................))))...)))..)))))..)))))))))... ( -22.45)
>DroSim_CAF1 1960 92 + 1
UUUGAUUGUUCAACUGGUUCCUCACCGUUUGGUCGUCAUGCAAGU----------------------------AAACAAAUCAAAUAAAAUGAAACUGGGAAAACGAGAAGGAACUAUGA
.((((....)))).((((((((...(((((..(((((((......----------------------------................))))...)))..)))))...))))))))... ( -16.35)
>consensus
UUUGAUUGUUCAACUGGUUCCUCACCGUUUGGUCGUCAUGCAAGU____________________________AAACAAAUCAAAUAAAAUGAAACUGGGAAAACGAGGAGGAACUAUGA
.((((....)))).(((((((((..(((((..(((((((..................................................))))...)))..)))))..)))))))))... (-17.59 = -18.26 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 16,466,960 – 16,467,080
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 80.72
Mean single sequence MFE -22.10
Consensus MFE -16.10
Energy contribution -15.66
Covariance contribution -0.44
Combinations/Pair 1.08
Mean z-score -1.44
Structure conservation index 0.73
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16466960 120 - 22224390
UCAUAGUUCCUCCUCGUUUUCCCAGUUUCAUUUUAUUUGAUUUGUUCGUUAUUUGUUUGUUUGUUUAUGCGAGCGAUUUGCAUGACGACCAAGCGGUGAGGAACCAGUUGAACAAUCAAA
(((..(((((((.((((..........(((.......))).(((.(((((((....((((((((....)))))))).....))))))).))))))).)))))))....)))......... ( -31.10)
>DroSec_CAF1 5099 92 - 1
UCAUAGUUCCUCCUCGUUUUCCCAGUUUCAUUUUAUUUGAUUUGUUU----------------------------ACUUGCAUGACGACCAAACGGUGAGGAACCAGUUGAACAAUCAAA
(((..(((((((.((((((.....((((((.......)))..(((..----------------------------....))).)))....)))))).)))))))....)))......... ( -18.40)
>DroSim_CAF1 1960 92 - 1
UCAUAGUUCCUUCUCGUUUUCCCAGUUUCAUUUUAUUUGAUUUGUUU----------------------------ACUUGCAUGACGACCAAACGGUGAGGAACCAGUUGAACAAUCAAA
(((..(((((((..(((((.....((((((.......)))..(((..----------------------------....))).)))....)))))..)))))))....)))......... ( -16.80)
>consensus
UCAUAGUUCCUCCUCGUUUUCCCAGUUUCAUUUUAUUUGAUUUGUUU____________________________ACUUGCAUGACGACCAAACGGUGAGGAACCAGUUGAACAAUCAAA
(((..(((((((.((((((........(((.......))).(((((.....................................)))))..)))))).)))))))....)))......... (-16.10 = -15.66 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:54 2006