Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,466,411 – 16,466,531 |
Length | 120 |
Max. P | 0.555227 |
Location | 16,466,411 – 16,466,531 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -42.30 |
Consensus MFE | -42.52 |
Energy contribution | -42.30 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.35 |
Structure conservation index | 1.01 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.555227 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16466411 120 - 22224390 CACAAGUCCUCCAGCCAGGUGUACGCCAUGAAGCGGCUGUCCAAAUUCGAGAUGAUGAAGCGACCGGACUCCGCGUUCUUCUGGGAGGAGCGACACAUUAUGGCGCACGCCAACUCCGAA .................(((((.((((((((.((((..((((....(((...........)))..)))).))))(((((((...)))))))......)))))))).)))))......... ( -40.90) >DroSec_CAF1 4556 120 - 1 CACAAGUCCUCCAGCCAGGUGUACGCCAUGAAGCGGCUGUCCAAAUUCGAGAUGAUGAAACGACCGGACUCCGCGUUCUUCUGGGAGGAGCGACACAUCAUGGCGCACGCCAACUCCGAA .................(((((.((((((((.((((..((((....(((...........)))..)))).))))(((((((...)))))))......)))))))).)))))......... ( -42.90) >DroSim_CAF1 1417 120 - 1 CACAAGUCCUCCAGCCAGGUGUACGCCAUGAAGCGGCUGUCCAAAUUCGAGAUGAUGAAGCGACCGGACUCCGCGUUCUUCUGGGAGGAGCGACACAUCAUGGCGCACGCCAACUCCGAA .................(((((.((((((((.((((..((((....(((...........)))..)))).))))(((((((...)))))))......)))))))).)))))......... ( -43.10) >consensus CACAAGUCCUCCAGCCAGGUGUACGCCAUGAAGCGGCUGUCCAAAUUCGAGAUGAUGAAGCGACCGGACUCCGCGUUCUUCUGGGAGGAGCGACACAUCAUGGCGCACGCCAACUCCGAA .................(((((.((((((((.((((..((((....(((...........)))..)))).))))(((((((...)))))))......)))))))).)))))......... (-42.52 = -42.30 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:52 2006