Locus 6595

Sequence ID X_DroMel_CAF1
Location 16,461,953 – 16,462,073
Length 120
Max. P 0.776081
window10775

overview

Window 5

Location 16,461,953 – 16,462,073
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.14
Mean single sequence MFE -31.82
Consensus MFE -19.34
Energy contribution -20.15
Covariance contribution 0.81
Combinations/Pair 1.36
Mean z-score -2.03
Structure conservation index 0.61
SVM decision value 0.54
SVM RNA-class probability 0.776081
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16461953 120 + 22224390
UUAUCCAGCAGCUUGGUGAUCUCUUCGUCCUUGCUGCUUCUCAUCAGCGCAAGCUCCUCCUGCUGCUUCUUGUGCUGCUGGACAAGAUCCUCGUACUCGGCUGCCUUCUGGCCCAGCUUC
......((((((..(((((.....))).))..)))))).......(((((((((..(....)..)))...))))))(((((.........(((....)))..(((....))))))))... ( -36.80)
>DroSim_CAF1 1455 120 + 1
UUAUCCAGCAGCUUGCUGAUCUCUUCGCCCUUGCUGCUUCUCAUCAGCGCAAGCUCCUCCUGCUGUUUCUUGUGCUGCUGGACAAGAUCCUCGUACUCGGCUGCCUUCUGGCCCAGCUUC
...(((((((((..((((((......((.......)).....))))))(((.((.......))))).......)))))))))................(((((((....)))..)))).. ( -34.70)
>DroEre_CAF1 1455 120 + 1
UUAUCCACCAGCUUGGUGAUCUCUUCGUCCUUGCUGCUCCUCAUAAGCGUGAGUUCCUCUUGCUGCUUCUUGUGCUGCUGGACAAGAUCCUCGUACUCGGCUCCCUUCUGGCCCAGCUUC
.....((((.....))))...((((.((((..((.((....((.(((((..((.....))..).))))..)).)).)).))))))))........((.((((.......)))).)).... ( -31.30)
>DroWil_CAF1 1483 120 + 1
UUCUCUACCAAUUUGGCAAUCUCCUCAUCCUUGCUGGCCCGCAGCAAUGUUAGUUCAUCCUGUUGCUUUUUAUGCUGUUGCAUUAGAUCCUCACAUUCGUUGAUCUUAAGGCCAAGUUUU
..............(((((...........)))))((((.(((((((((......)))..)))))).....((((....)))).(((((..(......)..)))))...))))....... ( -24.50)
>consensus
UUAUCCACCAGCUUGGUGAUCUCUUCGUCCUUGCUGCUCCUCAUCAGCGCAAGCUCCUCCUGCUGCUUCUUGUGCUGCUGGACAAGAUCCUCGUACUCGGCUGCCUUCUGGCCCAGCUUC
.......(((((..(((((.....))).))..)))))........(((....)))......((((..((((((.(....).))))))...........((((.......))))))))... (-19.34 = -20.15 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:50 2006