Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,458,923 – 16,459,043 |
Length | 120 |
Max. P | 0.888595 |
Location | 16,458,923 – 16,459,043 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.00 |
Mean single sequence MFE | -24.68 |
Consensus MFE | -14.82 |
Energy contribution | -16.32 |
Covariance contribution | 1.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.06 |
Structure conservation index | 0.60 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16458923 120 + 22224390 ACAUUUCCGAGUUCUACAUUCCAUUUUGCCUCAAAGGCAAAAUGUUUAAAAACCACGAUUUCAAAUGCUCAUCGCAGACCAAUUUGGAUCGGAAGUGGAAACUGAAACAGGAGACAGUAG .(((((((((...........(((((((((.....)))))))))........(((.((((.....(((.....)))....))))))).)))))))))............(....)..... ( -31.90) >DroSec_CAF1 9164 117 + 1 ACAUUUCCCAGUUUUACAUUCCAU-UUGCCUCAAAGGCAAAAUGUUUAAAAACCUUGAACUCAAAUGCUCAUCGCAGACCAAUUUGGAUCGGAUAUGGAAACUGAAACAU--GACAGUAG .(((....(((((((....(((.(-(((((.....))))))..((((((.....)))))).....(((.....)))((((.....)).)))))....)))))))....))--)....... ( -25.50) >DroEre_CAF1 9325 105 + 1 ACAUUUCUGAGUUUUAAUUUC-UU-UUGCCUCAAAGGCAAAAUGCUUAAAAA----AAAUUCAAAUGAUCAUCGUAGACCAAUUUGGAUCGGAACCGGAAACUGAAACAG--G------- .((((((((.(((((......-((-(((((.....)))))))..........----..((((((((..((......))...)))))))).))))))))))).))......--.------- ( -21.50) >DroYak_CAF1 9362 91 + 1 ACAUUUCUGAGUUUUACUUUCCAU-UUGCCUCAAAGGCAAAAUGUUUAAAAA-------------------CUGUAGACCAAUUUAGAUCGGAACUGGAAACUGAAACAG--G------- ..........((((((.(((((((-(((((.....))))))..((((.....-------------------(((..........)))....)))))))))).))))))..--.------- ( -19.80) >consensus ACAUUUCCGAGUUUUACAUUCCAU_UUGCCUCAAAGGCAAAAUGUUUAAAAA____GAAUUCAAAUGCUCAUCGCAGACCAAUUUGGAUCGGAACUGGAAACUGAAACAG__G_______ ..........((((((.((((((..(((((.....)))))....................................((((.....)).)).....)))))).))))))............ (-14.82 = -16.32 + 1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:46 2006