Locus 6592

Sequence ID X_DroMel_CAF1
Location 16,455,680 – 16,455,772
Length 92
Max. P 0.813383
window10771

overview

Window 1

Location 16,455,680 – 16,455,772
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 86.03
Mean single sequence MFE -30.55
Consensus MFE -22.02
Energy contribution -22.40
Covariance contribution 0.38
Combinations/Pair 1.11
Mean z-score -1.97
Structure conservation index 0.72
SVM decision value 0.66
SVM RNA-class probability 0.813383
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16455680 92 - 22224390
CAUUUUUCGCGCCGUGCAAAAGCAAAAAGAGCUUUUGAGCGCAGGCGGCGAUGGAAGUGGAGGGGCUGGGAGUCGCUGGCGGAGGAGGAGGA
..(((((((((((((((((((((.......))))))..)))).)))((((((...(((......)))....)))))).))))))))...... ( -33.60)
>DroSec_CAF1 5883 87 - 1
CAUUUUUCGCGCCGUGCAAAAGCA----GAG-CUUUAAGCGCAUGCGGCGAUGGAAGUGGAGGGGCUGGGAGUCGCUGGCGGAGGCGGAGGA
..((((((((.((((((.(((((.----..)-))))..))))...(((((((...(((......)))....)))))))..))..)))))))) ( -30.60)
>DroSim_CAF1 6464 87 - 1
CAUUUUUCGCGCCGUGCAAAAGCA----GAG-UUUUGAGCGCAGGCGGCGAUGGAAGUGGAGGGGCUGGGAGUCGCUGGCGGAGGCGGAGGA
..((((((((.((((((.(((((.----..)-))))..)))).(.(((((((...(((......)))....))))))).)))..)))))))) ( -32.10)
>DroEre_CAF1 6217 77 - 1
AAUUUU-UUUGCCGUGCAAAAGCA----GAG-CUUUGAGCGCAGGCGGCGAUGGAAGUUGAGGGGC--GAAGUCGCUGGCGGAGG-------
.....(-((((((((((.(((((.----..)-))))..))))....((((((....((......))--...))))))))))))).------- ( -25.90)
>consensus
CAUUUUUCGCGCCGUGCAAAAGCA____GAG_CUUUGAGCGCAGGCGGCGAUGGAAGUGGAGGGGCUGGGAGUCGCUGGCGGAGGCGGAGGA
...((((((((((((((.(((((.......).))))..)))).)))((((((...(((......)))....)))))).)))))))....... (-22.02 = -22.40 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:45 2006