Locus 6590

Sequence ID X_DroMel_CAF1
Location 16,453,500 – 16,453,604
Length 104
Max. P 0.999986
window10767 window10768

overview

Window 7

Location 16,453,500 – 16,453,604
Length 104
Sequences 3
Columns 104
Reading direction forward
Mean pairwise identity 70.73
Mean single sequence MFE -22.50
Consensus MFE -15.37
Energy contribution -16.60
Covariance contribution 1.23
Combinations/Pair 1.11
Mean z-score -2.61
Structure conservation index 0.68
SVM decision value 5.40
SVM RNA-class probability 0.999986
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16453500 104 + 22224390
ACUACCAGCAUGCACCUUUGCCCCCCCCUACGGGCCACACCCCCCAAGCCCCCGAUCAGAUAGUCCCCCCCCCCAUUUGGACCAUAUGUAUGUGUAGCCACUUA
.((((..(((((((.....((((........))))...........................((((............))))....)))))))))))....... ( -19.30)
>DroSec_CAF1 3788 78 + 1
ACUGCCCGCAUGCACCUUUGUGCCCCACCUCGGGCAACUC-------------------------CCCACCCCCUUUG-GGCCAUAUGCAUGUGUAGCCACUUA
.((((..(((((((......(((((......)))))....-------------------------((((.......))-)).....)))))))))))....... ( -24.00)
>DroSim_CAF1 4353 79 + 1
ACUGCCCGCAUGCACCUUUGUGCCCCAACUCGGGCAACUC-------------------------CCCACCCCCUUUGGGGCCAUAUGCAUAUGUAGCCACUUA
.((((....(((((....((.(((((((...(((......-------------------------....)))...)))))))))..)))))..))))....... ( -24.20)
>consensus
ACUGCCCGCAUGCACCUUUGUGCCCCACCUCGGGCAACUC_________________________CCCACCCCCUUUGGGGCCAUAUGCAUGUGUAGCCACUUA
.((((..(((((((......(((((......))))).................................(((......))).....)))))))))))....... (-15.37 = -16.60 +   1.23)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 8

Location 16,453,500 – 16,453,604
Length 104
Sequences 3
Columns 104
Reading direction reverse
Mean pairwise identity 70.73
Mean single sequence MFE -31.83
Consensus MFE -19.35
Energy contribution -20.13
Covariance contribution 0.79
Combinations/Pair 1.18
Mean z-score -2.35
Structure conservation index 0.61
SVM decision value 3.73
SVM RNA-class probability 0.999565
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16453500 104 - 22224390
UAAGUGGCUACACAUACAUAUGGUCCAAAUGGGGGGGGGGACUAUCUGAUCGGGGGCUUGGGGGGUGUGGCCCGUAGGGGGGGGCAAAGGUGCAUGCUGGUAGU
...(.((((((((...(....(((((..((.((..((....))..)).))...)))))....).))))))))).(((.(....(((....))).).)))..... ( -31.90)
>DroSec_CAF1 3788 78 - 1
UAAGUGGCUACACAUGCAUAUGGCC-CAAAGGGGGUGGG-------------------------GAGUUGCCCGAGGUGGGGCACAAAGGUGCAUGCGGGCAGU
......(((.(.(((((((.((.((-((....(((..(.-------------------------...)..)))....)))).)).....))))))).))))... ( -29.40)
>DroSim_CAF1 4353 79 - 1
UAAGUGGCUACAUAUGCAUAUGGCCCCAAAGGGGGUGGG-------------------------GAGUUGCCCGAGUUGGGGCACAAAGGUGCAUGCGGGCAGU
......(((...(((((((.(((((((((...(((..(.-------------------------...)..)))...))))))).))...)))))))..)))... ( -34.20)
>consensus
UAAGUGGCUACACAUGCAUAUGGCCCCAAAGGGGGUGGG_________________________GAGUUGCCCGAGGUGGGGCACAAAGGUGCAUGCGGGCAGU
......(((...(((((((.(.(((((....))))).)............................((.((((......))))))....)))))))..)))... (-19.35 = -20.13 +   0.79)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:43 2006