Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,848,377 – 1,848,467 |
Length | 90 |
Max. P | 0.960336 |
Location | 1,848,377 – 1,848,467 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 94.83 |
Mean single sequence MFE | -31.88 |
Consensus MFE | -27.40 |
Energy contribution | -27.40 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.10 |
Structure conservation index | 0.86 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.960336 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1848377 90 + 22224390 GACGCCGGCAGCGGCAUAGGCAGAGGCAGCAGCAGCGUUUCGUGGCUGCUGCUUUCUUUCGCUCGCUUACUCCUUUCAUUUCACUUUAUU ...((((....))))...((((((((.(((((((((........))))))))).))))).)))........................... ( -31.10) >DroSec_CAF1 49963 84 + 1 GACGCCGGCAGCGG------CAGAGGCAGCAGCAGCGUUUCGUGGCUGCUGCUUUCUUUCGCUCGCUUACUCCUUUCAUUUCACUUUAUU ......((((((((------.((((((((((((.(((...))).)))))))).)))).))))).)))....................... ( -31.50) >DroEre_CAF1 51245 84 + 1 GGCGCCGGCAGCGG------CAGAGGCAGCAGCAGCGUUUCGUGGCUGCUGCUUUCUUUCGCUCGCUUACUCCUUUCAUUUCACUUUAUU ((.(..((((((((------.((((((((((((.(((...))).)))))))).)))).))))).)))..).))................. ( -34.20) >DroYak_CAF1 41078 84 + 1 GACGCCGGCAGCGG------CAGAGGCAGCAGCAGCAUUUCGUGGCUGCUGCUUUCUUUCGCUCGCUUAAUCCUUUCAUUUCACUUUAUU ......((((((((------.((((((((((((.((.....)).)))))))).)))).))))).)))....................... ( -30.70) >consensus GACGCCGGCAGCGG______CAGAGGCAGCAGCAGCGUUUCGUGGCUGCUGCUUUCUUUCGCUCGCUUACUCCUUUCAUUUCACUUUAUU ......((((((((........(((((((((((.((.....)).)))))))))))...))))).)))....................... (-27.40 = -27.40 + 0.00)
Location | 1,848,377 – 1,848,467 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 94.83 |
Mean single sequence MFE | -30.20 |
Consensus MFE | -25.48 |
Energy contribution | -25.48 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.83 |
Structure conservation index | 0.84 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.936376 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1848377 90 - 22224390 AAUAAAGUGAAAUGAAAGGAGUAAGCGAGCGAAAGAAAGCAGCAGCCACGAAACGCUGCUGCUGCCUCUGCCUAUGCCGCUGCCGGCGUC ...........(((...((....((((.(((..(((.(((((((((........)))))))))...))).....))))))).))..))). ( -29.80) >DroSec_CAF1 49963 84 - 1 AAUAAAGUGAAAUGAAAGGAGUAAGCGAGCGAAAGAAAGCAGCAGCCACGAAACGCUGCUGCUGCCUCUG------CCGCUGCCGGCGUC ....................((..((.((((..(((.(((((((((........)))))))))...))).------.))))))..))... ( -29.80) >DroEre_CAF1 51245 84 - 1 AAUAAAGUGAAAUGAAAGGAGUAAGCGAGCGAAAGAAAGCAGCAGCCACGAAACGCUGCUGCUGCCUCUG------CCGCUGCCGGCGCC .................((.((..((.((((..(((.(((((((((........)))))))))...))).------.))))))..)).)) ( -31.50) >DroYak_CAF1 41078 84 - 1 AAUAAAGUGAAAUGAAAGGAUUAAGCGAGCGAAAGAAAGCAGCAGCCACGAAAUGCUGCUGCUGCCUCUG------CCGCUGCCGGCGUC ...........(((...((....((((.(((..((..(((((((((........)))))))))..)).))------))))).))..))). ( -29.70) >consensus AAUAAAGUGAAAUGAAAGGAGUAAGCGAGCGAAAGAAAGCAGCAGCCACGAAACGCUGCUGCUGCCUCUG______CCGCUGCCGGCGUC .................((....((((..(....)..(((((((((........)))))))))..............)))).))...... (-25.48 = -25.48 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:28 2006