Locus 6589

Sequence ID X_DroMel_CAF1
Location 16,452,629 – 16,452,727
Length 98
Max. P 0.908804
window10766

overview

Window 6

Location 16,452,629 – 16,452,727
Length 98
Sequences 4
Columns 98
Reading direction reverse
Mean pairwise identity 78.41
Mean single sequence MFE -35.40
Consensus MFE -24.34
Energy contribution -24.28
Covariance contribution -0.06
Combinations/Pair 1.19
Mean z-score -1.97
Structure conservation index 0.69
SVM decision value 1.06
SVM RNA-class probability 0.908804
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16452629 98 - 22224390
UCUAUCUACCUGUCCACCCAACGGAUUGUUUGUGGGUGUGGACUGCGCACUGGCGUCGUCUGCGCCCUGCCAUUGUUCCCGUUGGCCAAUCCGCUGGA
.................(((.(((((((.....(((((..(((.((((....)))).)))..))))).((((.((....)).))))))))))).))). ( -42.60)
>DroSim_CAF1 3579 81 - 1
UCUAACUGCCUGUCCACCCAACGGAUUGCCUGUGGGUGUGGACUG-----------------CGCCCAGCCAUUGUUCCCGUUGGCCAAUCCAAUGGG
.......((..((((((((.((((.....)))).)).)))))).)-----------------)..............((((((((.....)))))))) ( -30.00)
>DroEre_CAF1 3259 87 - 1
UCUA----CCUGUCCACCCAGCGGCAUGGUUGUGGGUGUGGACUG-------GCAUCGUCUGCGGCCUGCCAUUGUUCCCGUUGGCCAAACCGAUGGG
....----...((((((((.(((((...))))).)).))))))((-------((((((....)))..))))).....((((((((.....)))))))) ( -35.10)
>DroYak_CAF1 3161 88 - 1
UCAA----CCUGUCCACCCAACGGCAUAGUUGUGGGUGUGGACUGU------GCAGCGUCUGCGGCCUGCCAUUCUUCCCGUUGGCCAAUCCGAUGGG
....----...((((((((.(((((...))))).)).))))))((.------((((.((.....)))))))).....((((((((.....)))))))) ( -33.90)
>consensus
UCUA____CCUGUCCACCCAACGGAAUGGUUGUGGGUGUGGACUG_______GCAUCGUCUGCGCCCUGCCAUUGUUCCCGUUGGCCAAUCCGAUGGG
...........((((((((.(((((...))))).)).))))))..................................((((((((.....)))))))) (-24.34 = -24.28 +  -0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:41 2006