Locus 6588

Sequence ID X_DroMel_CAF1
Location 16,450,713 – 16,450,814
Length 101
Max. P 0.951475
window10765

overview

Window 5

Location 16,450,713 – 16,450,814
Length 101
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 73.33
Mean single sequence MFE -26.14
Consensus MFE -4.66
Energy contribution -5.14
Covariance contribution 0.48
Combinations/Pair 1.25
Mean z-score -2.05
Structure conservation index 0.18
SVM decision value 1.41
SVM RNA-class probability 0.951475
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16450713 101 + 22224390
GGUUGUUUAUACGAACAAUGUUUCGUUAAUUACGAGUAUUAUUUACUGGAAUAACUUGAAUU-UCGAAGUCGCUGGUG------------------CAAUGUACCGCUCGACUUUCGAAU
(((((((...(((((......)))))......(.((((.....)))).)))))))).....(-(((((((((.(((((------------------(...))))))..)))).)))))). ( -26.00)
>DroSec_CAF1 1183 99 + 1
UGUUGUUCAUGCGAACAAUGUUUCAUUAAUUACGAGUA---UUUACUGGAAUAACUUGAAUUUUUGAAGCCGCCGGUG------------------CAAUGCACUGCUCGACUUUCGAAU
.(((((((....)))))))((((((..((((.((((((---(((....)))).)))))))))..)))))).((.((((------------------(...)))))))(((.....))).. ( -27.30)
>DroSim_CAF1 1214 99 + 1
GGUUGUUCAUGCGAACAAUGUUUCAUUAAUUACGAGUA---UUUACUGGAAUAACUUGAAUUUUUGAAGCCGCUGGUG------------------CAAUGCACUGCUCGACUUUCGAAU
.(((((((....)))))))((((((..((((.((((((---(((....)))).)))))))))..)))))).((.((((------------------(...)))))))(((.....))).. ( -27.50)
>DroEre_CAF1 1306 111 + 1
GGGCAUUUAUACGAACAAUGUUUCAUUAAUUACGAGAA---UUUACAGGAAAAACUUGAUU-UUUCCAGAUGCUGGUGGAGACUCGUAAAAAACUGCA-CAUACUC--GUACAU--AAAU
.........(((((...((((........(((((((..---(((((.(((((((.....))-)))))((...)).)))))..)))))))........)-)))..))--)))...--.... ( -20.99)
>DroYak_CAF1 1216 114 + 1
GAUCGUUUAUACAAACAAUGUUUCAUUAAUUACGAGAA---UUUACUGGAAAAACUUGAUU-UUUCAAGACGCUGGUGGAGAUUCGUAAGAAAGUGCAAUGUACUGCACGACAU--AUAU
....((((....)))).(((((.......(((((((..---(((((..(.....(((((..-..)))))...)..)))))..)))))))....(((((......))))))))))--.... ( -28.90)
>consensus
GGUUGUUUAUACGAACAAUGUUUCAUUAAUUACGAGUA___UUUACUGGAAUAACUUGAAUUUUUGAAGACGCUGGUG__________________CAAUGUACUGCUCGACUUUCGAAU
.(((((((....)))))))........................((((((.....(((.........)))...)))))).......................................... ( -4.66 =  -5.14 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:40 2006