Locus 6587

Sequence ID X_DroMel_CAF1
Location 16,447,158 – 16,447,269
Length 111
Max. P 0.907241
window10764

overview

Window 4

Location 16,447,158 – 16,447,269
Length 111
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 87.09
Mean single sequence MFE -27.20
Consensus MFE -19.69
Energy contribution -20.81
Covariance contribution 1.12
Combinations/Pair 1.21
Mean z-score -2.40
Structure conservation index 0.72
SVM decision value 1.05
SVM RNA-class probability 0.907241
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16447158 111 + 22224390
AGCAUUCCUAAUGUUUUAGAUGUAGUCUAUUUAAAUGAAAUUAGAACUAGAACCCAACCUGUUUAUGCUAUCUUCCACGUUAGGGAAACCAGCGUGUUCCCAAGAGCAGGA
.......(((((..((((((((.....))))))))....))))).............(((((((.((........((((((.((....))))))))....)).))))))). ( -26.40)
>DroSec_CAF1 774 111 + 1
AGAAUUCCUAGUGUUUUAGAUGUAAUCCAUUUACAUCAAAUUAGAACUAGAACCCAACCUGUUUAUGCUAACUUCCACGUUAGGGAAACCAGCGUGUUCCCAAGAGCAGGA
.......(((((...((.(((((((.....))))))).)).....))))).......(((((((.((..(((....(((((.((....))))))))))..)).))))))). ( -31.90)
>DroSim_CAF1 1568 111 + 1
AGAAUUCCUAGUGUUUUAGAUGUAAUCCAUUUACAUCAAAUUAGAACUAGAACCCAACCUGUUUAUGCUAACUUCCACGUUAGGGAAACCAGCGUGUUCCCAAGAGCAGGA
.......(((((...((.(((((((.....))))))).)).....))))).......(((((((.((..(((....(((((.((....))))))))))..)).))))))). ( -31.90)
>DroEre_CAF1 1045 109 + 1
CCAAUUUAUGGUGUUUUAGAUGUAACCUAUUUAAAUCAAAUUAGAACUAGAACCCAGCCUGUUCAUUCUAUCUUUCACGUUAGGGAAACCAGCG--UUCCCAAGCGCAGGA
........(((.(((((((.(.(((...............))).).)))))))))).(((((....................((....)).((.--.......))))))). ( -22.06)
>DroYak_CAF1 1893 109 + 1
AGAAUUUAAAGUAUUUUACACAUAAGCUGUUUAAUUCAAAUUAGAACUAGAACCCAACCUGUUCUUUCCAACUUUAACGUUAGGGAAACCAGCG--UUCCCAAGAGCAGGA
.(((((...(((.............)))....)))))....................(((((((((.........((((((.((....))))))--))...))))))))). ( -23.72)
>consensus
AGAAUUCCUAGUGUUUUAGAUGUAAUCUAUUUAAAUCAAAUUAGAACUAGAACCCAACCUGUUUAUGCUAACUUCCACGUUAGGGAAACCAGCGUGUUCCCAAGAGCAGGA
.......(((((..((((((((.....))))))))....))))).............(((((((...........((((((.((....)))))))).......))))))). (-19.69 = -20.81 +   1.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:39 2006