| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,445,663 – 16,445,783 |
| Length | 120 |
| Max. P | 0.638740 |
| Location | 16,445,663 – 16,445,783 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 96.11 |
| Mean single sequence MFE | -53.33 |
| Consensus MFE | -47.69 |
| Energy contribution | -48.47 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.02 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.89 |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.638740 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16445663 120 - 22224390 GCAGGUUGGUUUGAUCCGUGCGCACGGCCAGUGGUCCUGUUGCUCCAUUCGCGUGCGCAUGCUGACUGUUAUAGAGCAGGGAGGGAUGGGCACCGGGUGGCUUAAAGCCACCGCUACUAG ((....((((((.(((((((((((((.(.(((((..(....)..))))).)))))))))).((..(((((....)))))..)))))).)).))))((((((.....))))))))...... ( -52.20) >DroSim_CAF1 115 120 - 1 GCAGGUUGGUUUGAUCCGUGCGCACGGCCAGUGGUCCUGUUGCUCCAUUCGCGUGCGCAUGCUGACUGUUAUAGAGCAGGGAGGGAUGGGCACCGGGUGGCUUAAAGCCACCGCUAGUAG ((....((((((.(((((((((((((.(.(((((..(....)..))))).)))))))))).((..(((((....)))))..)))))).)).))))((((((.....))))))))...... ( -52.20) >DroYak_CAF1 441 120 - 1 GCAGGUUGGGCUGAUCCGUGCGCACGGCCAGUGGUCCUGUUGCUCCAUUGGCGUGCGCAUGCUGACUGUUAUAGAGGAGGGAGGGAUGGGCACCGGGAGGCUUAAAGCCACCGCCACUAG ...(((((((((.(((((((((((((.(((((((..(....)..)))))))))))))))).((..((.((....)).))..)))))).))).)))((.(((.....))).)))))..... ( -55.60) >consensus GCAGGUUGGUUUGAUCCGUGCGCACGGCCAGUGGUCCUGUUGCUCCAUUCGCGUGCGCAUGCUGACUGUUAUAGAGCAGGGAGGGAUGGGCACCGGGUGGCUUAAAGCCACCGCUACUAG ((....((((((.(((((((((((((.(.(((((..(....)..))))).)))))))))).((..(((((....)))))..)))))).)).))))((((((.....))))))))...... (-47.69 = -48.47 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:38 2006