Locus 6584

Sequence ID X_DroMel_CAF1
Location 16,437,321 – 16,437,441
Length 120
Max. P 0.932669
window10759

overview

Window 9

Location 16,437,321 – 16,437,441
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.75
Mean single sequence MFE -38.32
Consensus MFE -32.66
Energy contribution -32.90
Covariance contribution 0.24
Combinations/Pair 1.10
Mean z-score -1.76
Structure conservation index 0.85
SVM decision value 1.22
SVM RNA-class probability 0.932669
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16437321 120 - 22224390
CAGAGCACUCCCACUCGUUGCUUUUCGCAUUUGUAAUCAACGGUGAGAAGUUGUUGACCUUUGGUGCAACAGUUUUCCUUGGAGUCUCGCAGGCAAUGCAUUUGCUGGCUUCAGCCUUAU
..(((.(((((........(((((((((..(((....)))..)))))))))((((((((...))).))))).........))))))))...(((((.....)))))(((....))).... ( -36.60)
>DroSec_CAF1 3008 120 - 1
CGGAGCACUCCCACUCGUUGCUUUUCGCAUUUGUAAUCAACGGUGAGAAGUUGUUGACCUUUGGUGCAACAGUUUUCCUUGGAGUCUCGCAGGCAAUGCAUUUGCUGGCUUCAGCCUUAU
..(((.(((((........(((((((((..(((....)))..)))))))))((((((((...))).))))).........))))))))...(((((.....)))))(((....))).... ( -36.40)
>DroSim_CAF1 3441 120 - 1
CGGAGCACUCCCACUCGUUGCUUUUCGCAUUUGUAAUCAACGGUGAGAAGUUGUUGACCUUUGGUGCAACAGUUUUCCUUGGAGUCUCGCAGGCAAUGCAUUUGCUGGCUUCAGCCUUAU
..(((.(((((........(((((((((..(((....)))..)))))))))((((((((...))).))))).........))))))))...(((((.....)))))(((....))).... ( -36.40)
>DroEre_CAF1 3048 120 - 1
CAGAGCACUCCCACUCGUUGCUUUUCGCAUUUGUGAUCAACGGAGAGAAGCUGUUAACCUUUGGCGCACCAGUUUUCCUUGGAGUCUCGCAGGCAAUGCAUUUGCUGGCUUCAGCCUUGU
..(((.(((((....(((((....((((....)))).)))))(((..((((((....((...)).....))))))..)))))))))))((((((((.....)))))(((....))).))) ( -36.10)
>DroYak_CAF1 3061 120 - 1
CAGAGCACUCCCACUCGUUGCUUUUCGCAUUUGUGAUCAGCGGAGUGAAGCUGUUGACCUUUGGUGCAGCAGUUUUCCUUGGAGUCUCGCAGGCAAUGCAUUUGCUGGCUUCAGCCUUAU
..(((.((((((((((..((((..((((....))))..)))))))))((((((((((((...))).))))))))).....))))))))...(((((.....)))))(((....))).... ( -46.10)
>consensus
CAGAGCACUCCCACUCGUUGCUUUUCGCAUUUGUAAUCAACGGUGAGAAGUUGUUGACCUUUGGUGCAACAGUUUUCCUUGGAGUCUCGCAGGCAAUGCAUUUGCUGGCUUCAGCCUUAU
..(((.((((((((.(((((.((...((....)))).)))))))).(((((((((((((...))).))))))))))....))))))))...(((((.....)))))(((....))).... (-32.66 = -32.90 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:35 2006