Locus 6583

Sequence ID X_DroMel_CAF1
Location 16,436,824 – 16,436,919
Length 95
Max. P 0.522877
window10758

overview

Window 8

Location 16,436,824 – 16,436,919
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 91.89
Mean single sequence MFE -20.36
Consensus MFE -16.15
Energy contribution -16.75
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.79
SVM decision value -0.02
SVM RNA-class probability 0.522877
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16436824 95 + 22224390
UACUACAAACUCCAAGCAGAUGCCAAACUUCCUGGCUAAUCCCCAGCCUGCGGCACCAAUUGUUAACUUCGCUGCCAAUGGAAACGUUUCUGCAA
...............(((((.((.....((((.((((.......)))).(((((................)))))....))))..)).))))).. ( -21.49)
>DroSec_CAF1 2511 95 + 1
UACUACAAACUCCAAGCAGAUGCCAAACUUCCUGGCUAAUCCCCAGCCUGCGGCACCAAUUGUUAACUUCGCUGCCAAUGGAAACGUUCCUGCAA
...............((((..((((.......))))......(((....(((((................)))))...)))........)))).. ( -20.19)
>DroSim_CAF1 2944 95 + 1
UGCCUCCAACUCCAAGCAGAUGCCAAACUUCCUGGCUAAUCCCCAGCCUGCGGCACCAAUUGUUAACUUCGCUGCCAAUGGAAACGUUCCUGCAA
...............((((..((((.......))))......(((....(((((................)))))...)))........)))).. ( -20.19)
>DroEre_CAF1 2527 95 + 1
UACUACAAAUUCGAAGCAGCUGCAAAACUUCCUGGCUAAUCCGCAGCCUGCGGUACCAAUUGUAAACUUCUCUGCCAAUGGAAACGUUUCUGCAA
...............((((..((.........((((....((((.....))))(((.....))).........))))..(....)))..)))).. ( -20.80)
>DroYak_CAF1 2543 95 + 1
UACUACAAACUCCAAGCAGCUGCAAAAUUUCCUGGCUAAUCCGCAGCCUGCGGCCCCAAUUGUGAACUUCUCUGCCAAUGGAAACGUUUCCGCAA
..........((((.((((((((...................)))).))))(((.......(....)......)))..))))............. ( -19.13)
>consensus
UACUACAAACUCCAAGCAGAUGCCAAACUUCCUGGCUAAUCCCCAGCCUGCGGCACCAAUUGUUAACUUCGCUGCCAAUGGAAACGUUUCUGCAA
...............((((..((.....((((.((((.......)))).(((((................)))))....))))..))..)))).. (-16.15 = -16.75 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:34 2006