| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,435,894 – 16,435,984 |
| Length | 90 |
| Max. P | 0.607506 |
| Location | 16,435,894 – 16,435,984 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 75.09 |
| Mean single sequence MFE | -31.78 |
| Consensus MFE | -11.60 |
| Energy contribution | -11.55 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.37 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.607506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16435894 90 + 22224390 UGGCAGUGCCUCUAACU---CA------GGCUCUGCAUCUGCCU------CUAGCUCGCCCUUUUACCAGGGACGCACCACCUUCGGGGGCAAUUCCGGCAACAA ..((((.((((......---.)------))).))))...((((.------...((...((((......))))..)).((.((....)))).......)))).... ( -32.40) >DroPse_CAF1 1543 96 + 1 GCGCAGUGCUUCCGCCU---CGGCCUGGGGCUCCGGCUCAACAU------UAAGCUCGCCCUUCUACAAGGGCCAGACCACAUUCGGCGGCAAUUCGGCGCACAA ((((.......(((((.---.((((((((((...((((......------..)))).))))).......))))).((......))))))).......)))).... ( -36.95) >DroEre_CAF1 1597 90 + 1 UCGCAGUGCCUCAAAUU---CA------GGAUCUGCAUCUGCCU------CCAGUUCGCCCUUUUACCAGGGACGCACCACCUUUGGCGGCAAUUCCGCCAACAA ..((((..(((......---.)------))..))))........------...((.((((((......)))).)).)).....(((((((.....)))))))... ( -26.30) >DroYak_CAF1 1613 90 + 1 UCGCAGUGCCUCAAACU---CG------GGCUCUGCAUCUGCCU------CCAGCUCGCCCUUUUACCAGGGACGCACCACCUUUGGCGGCAAUUCCGCCAACAA ..((((.((((......---.)------))).))))........------...((...((((......))))..)).......(((((((.....)))))))... ( -30.90) >DroAna_CAF1 2676 99 + 1 CCGCAGUGCCUCCGCCGCCGCC------GCCUCGCCAACUGCCUCCUCGUCAAGCUCGCCCUUCUACCAGGGCCGCACCACCUUCGGCGGCAACUCGGCCAACAA (((.(((((....)).((((((------(....((.....))...........((..(((((......))))).))........))))))).))))))....... ( -30.40) >DroPer_CAF1 1562 96 + 1 ACGCAGUGCUUCCGCCU---CGGCCUGGGGCUCCGGCUCAACAU------UAAGCUCGCCCUUCUACAAGGGCCAGACCACAUUCGGCGGCAAUUCGGCGCACAA .....(((((.(((((.---.((((((((((...((((......------..)))).))))).......))))).((......)))))))......))))).... ( -33.71) >consensus UCGCAGUGCCUCCAACU___CG______GGCUCUGCAUCUGCCU______CAAGCUCGCCCUUCUACCAGGGACGCACCACCUUCGGCGGCAAUUCCGCCAACAA ..((..((((...............................................(((((......)))).)...((......)).)))).....))...... (-11.60 = -11.55 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:33 2006