| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,433,328 – 16,433,486 |
| Length | 158 |
| Max. P | 0.995902 |
| Location | 16,433,328 – 16,433,446 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.73 |
| Mean single sequence MFE | -34.28 |
| Consensus MFE | -25.06 |
| Energy contribution | -25.58 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.748671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16433328 118 + 22224390 UUAAAUUGCAAUUAAAAGUGUGGAUUUCGCGGCGGUAAAACGCCAAAAUUCGUACCGAAUCGCUGCGCGCGUGUG--UGUGUGAGCAGAGCGUGAAGAAGAGGAACGAAGAAUUGCGAAA .....((((((((....(((.......)))((((......))))....(((((.((...((....(((((.(.((--(......))).))))))..))...)).))))).)))))))).. ( -35.90) >DroSec_CAF1 5300 118 + 1 UUAAAUUGCAAUCAAAAGUGUAGAUUUCGCGGCGGUAAAACGCCAAAAUUCGUACCGAAUCGCUGCGCGCGUGUG--UGUGUGAGCAGAGCGUGAAGAAGAGGAACGAAGAAUUGCGAAA .....(((((........))))).((((((((((......))))....(((((.((...((....(((((.(.((--(......))).))))))..))...)).))))).....)))))) ( -35.60) >DroSim_CAF1 6300 118 + 1 UUAAAUUGCAAUCAAAAGUGUAGAUUUCGCGGCGGUAAAACGCCAAAAUUCGUACCGAAUCGGUGCGCGCGUGUG--UGUGUGAGCAGAGCGUGAAGAAGAGGAACGAAGAAUUGCGAAA .....(((((........))))).((((((((((......))))....(((((.((...((....(((((.(.((--(......))).))))))..))...)).))))).....)))))) ( -35.60) >DroEre_CAF1 5624 120 + 1 UUAAAUUGCAACCAGAAACGUGCAUUCGGCCGCAGUAAAAUGCAAAAAUUUCUACCGAUUCGCAGCGCGCGUGUGUGUGUGUGAGCAGAGCGUGAAGAAGAGGAACGAAGAAUUGCGAAA .....((((((..(((((..((((((..((....))..))))))....))))).((..(((....(((((.(.(((........))).))))))..)))..)).........)))))).. ( -30.90) >DroYak_CAF1 5768 118 + 1 CUAAAUUGUAAUCAAAAGCGUGCUUUUGACCGCUGUAAAAUGCCAAAAUUGGUACCGAUUCGCAGCGCGCGUGUG--UGUGUGAGCAGAGCGUGAAGAAGAGGAACGGAGAAUUGCGAAA .....(((((((((((((....)))))))(((........(((((....)))))((..(((....(((((.(.((--(......))).))))))..)))..))..)))....)))))).. ( -33.40) >consensus UUAAAUUGCAAUCAAAAGUGUGGAUUUCGCGGCGGUAAAACGCCAAAAUUCGUACCGAAUCGCUGCGCGCGUGUG__UGUGUGAGCAGAGCGUGAAGAAGAGGAACGAAGAAUUGCGAAA .....(((((((..................((((......))))....(((((.((...((....(((((.(((..........)))..)))))..))...)).)))))..))))))).. (-25.06 = -25.58 + 0.52)
| Location | 16,433,368 – 16,433,486 |
|---|---|
| Length | 118 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 90.26 |
| Mean single sequence MFE | -33.58 |
| Consensus MFE | -27.77 |
| Energy contribution | -27.89 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -2.57 |
| Structure conservation index | 0.83 |
| SVM decision value | 2.63 |
| SVM RNA-class probability | 0.995902 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16433368 118 + 22224390 CGCCAAAAUUCGUACCGAAUCGCUGCGCGCGUGUG--UGUGUGAGCAGAGCGUGAAGAAGAGGAACGAAGAAUUGCGAAAGCAGUGUGUGCGGAAGAAGUGGAAGAAGCACAAAGACAAA (((((...(((((.((...((....(((((.(.((--(......))).))))))..))...)).)))))..(((((....))))).)).)))......(((.......)))......... ( -33.00) >DroSec_CAF1 5340 109 + 1 CGCCAAAAUUCGUACCGAAUCGCUGCGCGCGUGUG--UGUGUGAGCAGAGCGUGAAGAAGAGGAACGAAGAAUUGCGAAAGCAGUGUGUGCGGAA---------GAAGCACAAAGACAAA ........(((((.((...((....(((((.(.((--(......))).))))))..))...)).)))))..(((((....))))).(((((....---------...)))))........ ( -33.30) >DroSim_CAF1 6340 118 + 1 CGCCAAAAUUCGUACCGAAUCGGUGCGCGCGUGUG--UGUGUGAGCAGAGCGUGAAGAAGAGGAACGAAGAAUUGCGAAAGCAGUGUGUGCGGAAGAAGUGGAAGAAGCACAAAGACAAA (((((...(((((.((...((....(((((.(.((--(......))).))))))..))...)).)))))..(((((....))))).)).)))......(((.......)))......... ( -33.00) >DroEre_CAF1 5664 115 + 1 UGCAAAAAUUUCUACCGAUUCGCAGCGCGCGUGUGUGUGUGUGAGCAGAGCGUGAAGAAGAGGAACGAAGAAUUGCGAAAGCAGUGUGUGC-----AAGCGGAAGAAGCACAAAGACAAA ........((((..((..(((....(((((.(.(((........))).))))))..)))..))...)))).(((((....))))).(((((-----...(....)..)))))........ ( -32.70) >DroYak_CAF1 5808 113 + 1 UGCCAAAAUUGGUACCGAUUCGCAGCGCGCGUGUG--UGUGUGAGCAGAGCGUGAAGAAGAGGAACGGAGAAUUGCGAAAGCAGUGUGUGC-----AAGCGGAAGAAGCACAAAGACAAA (((((....)))))((..(((....(((((.(.((--(......))).))))))..)))..))........(((((....))))).(((((-----...(....)..)))))........ ( -35.90) >consensus CGCCAAAAUUCGUACCGAAUCGCUGCGCGCGUGUG__UGUGUGAGCAGAGCGUGAAGAAGAGGAACGAAGAAUUGCGAAAGCAGUGUGUGCGGAA_AAGCGGAAGAAGCACAAAGACAAA ........(((((.((...((....(((((.(((..........)))..)))))..))...)).)))))..(((((....))))).(((((................)))))........ (-27.77 = -27.89 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:30 2006