Locus 6578

Sequence ID X_DroMel_CAF1
Location 16,427,637 – 16,427,728
Length 91
Max. P 0.902097
window10749

overview

Window 9

Location 16,427,637 – 16,427,728
Length 91
Sequences 3
Columns 91
Reading direction forward
Mean pairwise identity 85.35
Mean single sequence MFE -15.87
Consensus MFE -14.65
Energy contribution -14.43
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.69
Structure conservation index 0.92
SVM decision value 1.02
SVM RNA-class probability 0.902097
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16427637 91 + 22224390
UUCACUCAGUACAGAUAUAUUUUUAUAGAAAGCCACUCGAUUCAUUCGAUAUAAAUAAACACGGAACACCGUUUGUGUUUAUUAUAUUACG
.............(((((..................((((.....))))....((((((((((((......)))))))))))))))))... ( -14.20)
>DroSim_CAF1 14 91 + 1
UUCACUCAGUACAUAUUUAUUAUUAUAGAAAGACAUUCGAUACAUUCGAUAUAAAUAAACACGAAACACGGUUUGUGUUUAUUAUAUUACG
........(((.((((....................((((.....))))....((((((((((((......))))))))))))))))))). ( -14.80)
>DroYak_CAF1 1 85 + 1
---ACUCAGUACAGAUAUAUUGCCAUAGAAAACUAGUCGAUAUAUUCGAUAUAAAUAAACACGAAA---GGUUUGUGUUUAUUAUAUUACG
---..........(((((((((...(((....)))..))))))))).(((((((.(((((((((..---...))))))))))))))))... ( -18.60)
>consensus
UUCACUCAGUACAGAUAUAUUAUUAUAGAAAGCCACUCGAUACAUUCGAUAUAAAUAAACACGAAACACGGUUUGUGUUUAUUAUAUUACG
........(((.........................((((.....))))....((((((((((((......))))))))))))....))). (-14.65 = -14.43 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:26 2006