Locus 6577

Sequence ID X_DroMel_CAF1
Location 16,426,726 – 16,426,833
Length 107
Max. P 0.782366
window10748

overview

Window 8

Location 16,426,726 – 16,426,833
Length 107
Sequences 3
Columns 113
Reading direction reverse
Mean pairwise identity 89.97
Mean single sequence MFE -21.31
Consensus MFE -18.54
Energy contribution -18.32
Covariance contribution -0.22
Combinations/Pair 1.04
Mean z-score -2.08
Structure conservation index 0.87
SVM decision value 0.56
SVM RNA-class probability 0.782366
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16426726 107 - 22224390
CUC-----UACUGCCUUGGAAGAUGUAGUCAAU-GGUUGUAACAUAUCGCUCAAAAUCCUCUAAAGCAACCCGCUCAUAGCAUCUUCUCAUAAUAUUCAAACUUAUAGGCAAA
...-----...(((((.(((((((((.((....-((((((.........................)))))).....)).)))))))))....(((........)))))))).. ( -20.41)
>DroSec_CAF1 3453 113 - 1
CUCAUUUAUACUGCCUUGGAAGAUGCAGUCAAUUGGUUCUAACAUAUCGCUUAAAAUCCUCUAAAGCAUUCCGAUCAUAGCAUCUUCUCAUAAUAUUCAAACUUAUAGGCAAA
...........(((((.(((((((((........(((........)))((((...........))))............)))))))))....(((........)))))))).. ( -20.60)
>DroSim_CAF1 3453 113 - 1
CUCAUUUAUAUUGCCUUGGAAGAUGCAGUCAAUUGGUUGUAACAAAUCGCUCGAAAUCCUCUACAGCAUCCCGCUCAUAGCAUCUUCUUAUAAUAUUCAAACUUAUAGGCAAA
..........((((((.((((((((((((......((((((.....((....)).......)))))).....)))....)))))))))..................)))))). ( -22.91)
>consensus
CUCAUUUAUACUGCCUUGGAAGAUGCAGUCAAUUGGUUGUAACAUAUCGCUCAAAAUCCUCUAAAGCAUCCCGCUCAUAGCAUCUUCUCAUAAUAUUCAAACUUAUAGGCAAA
...........(((((.(((((((((........(((........)))(((.............)))............)))))))))....(((........)))))))).. (-18.54 = -18.32 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:25 2006