Locus 6572

Sequence ID X_DroMel_CAF1
Location 16,420,868 – 16,420,964
Length 96
Max. P 0.500000
window10735

overview

Window 5

Location 16,420,868 – 16,420,964
Length 96
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 95.83
Mean single sequence MFE -13.22
Consensus MFE -12.49
Energy contribution -12.55
Covariance contribution 0.06
Combinations/Pair 1.05
Mean z-score -1.39
Structure conservation index 0.94
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16420868 96 + 22224390
UCGUUUUGCUUUUAGCUCGAAAUUUUCACACUCGACGGUUUAAGCUUUUGUUUUUUCGCUAUUCGCAAUUCGUGUUAAACUUUUUACUUAAUUUUU
.((..((((...((((((((...........)))).((...((((....))))..))))))...))))..))........................ ( -14.00)
>DroSec_CAF1 41540 96 + 1
UCGUUUUGCUUUUAGCUCGAAAUUUUCACACUCGACGGUUUAAGCUUUUGUUUUUUCGCUAUUCGCAAUUCGUGUUAUACUUUUUAAUUAAUUUUU
.((..((((...((((((((...........)))).((...((((....))))..))))))...))))..))........................ ( -14.00)
>DroSim_CAF1 37808 96 + 1
UCGUUUUGCUUUUAGCUCGAAAUUUUCACACUCGACGGUUUAAGCUUUUGUUUUUUCGCUAUUCGCAAUUCGUGUUAUACUUUUUACUUAAUUUUU
.((..((((...((((((((...........)))).((...((((....))))..))))))...))))..))........................ ( -14.00)
>DroYak_CAF1 39230 94 + 1
UCGCUUUGCUUUUAGCUUGAAAUUUUCACACUCGACGGUUUAAGCUUUUGUUU-UUCGCUAUUUGCAAUUCCUGUUAUACUUUUUACUUAAUU-UU
.....((((...((((...((((..((......))..))))((((....))))-...))))...)))).........................-.. ( -10.90)
>consensus
UCGUUUUGCUUUUAGCUCGAAAUUUUCACACUCGACGGUUUAAGCUUUUGUUUUUUCGCUAUUCGCAAUUCGUGUUAUACUUUUUACUUAAUUUUU
.((..((((...((((((((...........)))).((...((((....))))..))))))...))))..))........................ (-12.49 = -12.55 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:13 2006