Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,419,307 – 16,419,420 |
Length | 113 |
Max. P | 0.809728 |
Location | 16,419,307 – 16,419,420 |
---|---|
Length | 113 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.40 |
Mean single sequence MFE | -33.50 |
Consensus MFE | -28.22 |
Energy contribution | -28.70 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.06 |
Mean z-score | -1.49 |
Structure conservation index | 0.84 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809728 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16419307 113 - 22224390 UCCUUCGACUCCUGAGCUCUUAACUCCAGGGACAUGCCA-CAAGGUUCCACUGUGCGCGUGUUUUCGUUCCGAGAGCUUAGACCCAAGGUC-CCUGGCUCAUCUCGUCACUUUUG----- ......(((..((((((((((.....(..((((((((((-((.(......))))).))))))))..)....))))))))))..(((.(...-.))))........))).......----- ( -34.70) >DroSec_CAF1 39944 113 - 1 UCCUUCGACUCCUGAGCUCUUAACUCCAGGGACAUGCCA-CAAGGUUCCACUGUGCGCGUGUUUUCGUUCCGAGAGCUUAGACCCAAGGUC-CCUGGCUCAUCUCGUCACUUUUG----- ......(((..((((((((((.....(..((((((((((-((.(......))))).))))))))..)....))))))))))..(((.(...-.))))........))).......----- ( -34.70) >DroSim_CAF1 36239 113 - 1 UCCUUCGACUCCUGAGCUCUUAACUCCAGGGACAUGCCA-CAAGGUUCCACUGUGCGCGUGUUUUCGUUCCGAGAGCUUAGACCCAAGGUC-CCUGGCUCAUCUCGUCACUUUUG----- ......(((..((((((((((.....(..((((((((((-((.(......))))).))))))))..)....))))))))))..(((.(...-.))))........))).......----- ( -34.70) >DroYak_CAF1 37576 113 - 1 UCCUUCGACUCCUGAGCUCUUAACUCCAGGGACAUGCCA-CAAGGUUCCACUGUGCGCGUGUUUUCGUUCCGAGAGCUUAGACCCAAGGUC-CCUGGCUCAUCUCGUCACUUUUG----- ......(((..((((((((((.....(..((((((((((-((.(......))))).))))))))..)....))))))))))..(((.(...-.))))........))).......----- ( -34.70) >DroAna_CAF1 42822 120 - 1 UCCUUCGACUUCUGCGAGCUCAACUCCAGGGAUAUGCCAUCAAGGCUCCACUGUGCGCGUGUUUUCGUUUCGAGAGCUUAGUCCCAAGGUCCCCUGGCUCAUCUCUUCUACGUCGCUUCA .....((((..(((.(((.....))))))((((..((((....((..((..((.(.((..(((((((...)))))))...)).))).))..)).))))..)))).......))))..... ( -28.70) >consensus UCCUUCGACUCCUGAGCUCUUAACUCCAGGGACAUGCCA_CAAGGUUCCACUGUGCGCGUGUUUUCGUUCCGAGAGCUUAGACCCAAGGUC_CCUGGCUCAUCUCGUCACUUUUG_____ ......(((..((((((((((.....(..((((((((((...((......)).)).))))))))..)....))))))))))..(((.((...)))))........)))............ (-28.22 = -28.70 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:10 2006