Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,839,111 – 1,839,206 |
Length | 95 |
Max. P | 0.892667 |
Location | 1,839,111 – 1,839,206 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 71.33 |
Mean single sequence MFE | -30.05 |
Consensus MFE | -16.55 |
Energy contribution | -16.79 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.20 |
Mean z-score | -1.89 |
Structure conservation index | 0.55 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892667 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1839111 95 - 22224390 AGUAGCCAAGAACGUUGGCUGGCGAAAGGUAAGUCUCUGGAUGCAGAGAAACAAAACAGGCCCAGUGUCGCAACAGGGGAAAAU-GCCAGUU---CGGC--- ..(((((((.....))))))).((((.((((..((((((....))))))...........(((.((......)).))).....)-)))..))---))..--- ( -28.10) >DroSec_CAF1 40039 96 - 1 AGCAGCCAAGAACGUC-GCUGGCGAAAGGCAAGUCUCUGGAUGCAGAGAAACAAAAU-GGUCUAGUGUCGCAGCAGGGGAAACU-CCCAGUG---CGGCUAA ...((((.....((.(-((((((....).....((((((....))))))........-...)))))).))..(((.(((.....-)))..))---))))).. ( -33.10) >DroSim_CAF1 39067 72 - 1 AGCAGCCAAGAACGUC-GCUGGCGAAAGGCAAGUCUCUGGAUGCAGAGAAACAAAAU-GGUCUAGUGUCGCAGC---------------------------- ..((((..........-))))((((.((((...((((((....))))))........-.))))....))))...---------------------------- ( -18.60) >DroEre_CAF1 42770 93 - 1 UGCAGCCCGGAACGGCGGCUGGCGAAAGGCAGGUCUCUGGAUGCAGAGAGACAAAAU-GGUCUGGUGCCGGAU--------ACUUUCCAGCCAGCUGGCAAG (((.(((......)))(((((((....((((..((((((....))))))(((.....-.)))...))))(((.--------....))).))))))).))).. ( -40.40) >consensus AGCAGCCAAGAACGUC_GCUGGCGAAAGGCAAGUCUCUGGAUGCAGAGAAACAAAAU_GGUCUAGUGUCGCAGC_______ACU__CCAGU____CGGC___ .((((((.........))))((((..((((...((((((....))))))..........))))..))))))............................... (-16.55 = -16.79 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:26 2006