Locus 6569

Sequence ID X_DroMel_CAF1
Location 16,418,973 – 16,419,093
Length 120
Max. P 0.887548
window10731

overview

Window 1

Location 16,418,973 – 16,419,093
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 92.22
Mean single sequence MFE -38.27
Consensus MFE -33.31
Energy contribution -34.88
Covariance contribution 1.56
Combinations/Pair 1.03
Mean z-score -1.90
Structure conservation index 0.87
SVM decision value 0.95
SVM RNA-class probability 0.887548
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16418973 120 + 22224390
AAUUCGGAAUUCGAAAUACGAAAUACGAAAUAUGGAGUGGCGGAACGUCAAUUGCGAAUCGCUUCGAUUGGAACGCCGAUGGAGCAAUUAUUGGAUGAUUGCAUUGGACGGACGCCCCGC
..((((...((((.....))))...))))....((...((((...((((...(((.(((((((((.(((((....)))))))))).(((....))))))))))...))))..)))))).. ( -37.40)
>DroSec_CAF1 39610 120 + 1
AAUUCGGAAUUCGGAAUACGAAAUACGAAAUACGGAGUGGCGCAACGUCAAUUGCGAAUCGCUUCGAUUGGAACGCCGAUGGAGCAAUUAUUGGAUGAUUGCAUUGGACGGACGCCCCGC
..((((...((((.....))))...))))...(((...((((...((((...(((.(((((((((.(((((....)))))))))).(((....))))))))))...))))..))))))). ( -39.20)
>DroSim_CAF1 35906 120 + 1
AAUUCGGAAUUCGGAAUACGAAAUACGAAAUACGGAGUGGCGGAACGUCAAUUGCGAAUCGCUUCGAUUGGAACGCCGAUGGAGCAAUUAUUGGAUGAUUGCAUUGGACGGACGCCCCGC
..((((...((((.....))))...))))...(((...((((...((((...(((.(((((((((.(((((....)))))))))).(((....))))))))))...))))..))))))). ( -40.30)
>DroYak_CAF1 37224 106 + 1
AAUUCGGAAUUCG--------------AAAUGCGGAGUGGCGGAACGUCAAUGGCGAAUCGCUUCGAUUGGAACGCCGAUGGAGCAAUUAUUGGAUGAUUGCAUUGGACGGACGCCCCGC
..((((.....))--------------))..((((...((((...((((....((.(((((((((.(((((....)))))))))).(((....)))))))))....))))..)))))))) ( -36.20)
>consensus
AAUUCGGAAUUCGGAAUACGAAAUACGAAAUACGGAGUGGCGGAACGUCAAUUGCGAAUCGCUUCGAUUGGAACGCCGAUGGAGCAAUUAUUGGAUGAUUGCAUUGGACGGACGCCCCGC
..((((...((((.....))))...))))...(((...((((...((((...(((.(((((((((.(((((....)))))))))).(((....))))))))))...))))..))))))). (-33.31 = -34.88 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:09 2006