Locus 6568

Sequence ID X_DroMel_CAF1
Location 16,418,292 – 16,418,384
Length 92
Max. P 0.988555
window10729 window10730

overview

Window 9

Location 16,418,292 – 16,418,384
Length 92
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 79.25
Mean single sequence MFE -26.54
Consensus MFE -19.71
Energy contribution -19.51
Covariance contribution -0.20
Combinations/Pair 1.25
Mean z-score -2.45
Structure conservation index 0.74
SVM decision value 2.13
SVM RNA-class probability 0.988555
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16418292 92 + 22224390
AACUGGCAAAUGUUAACCGAUGGC-CGAUUAGCUGUCAAACUGCAUAUUUGCAUAGCUAAUCACUCAAUCGGUCGCCCAUUCAAU--------------UGGUGCAU
...((((....))))((((((((.-.((((((((((((((.......)))).))))))))))..)).)))))).(((((......--------------))).)).. ( -28.00)
>DroSec_CAF1 38884 93 + 1
AACUGGCAAAUGUUAACCGAUGGCCCGAUUAGCUGUCAAACUGCAUAUUUGCAUAGCUAAUCACUCAAUCGGUCGCCCAUUCAAU--------------UGGUGCAU
...((((....))))((((((.....((((((((((((((.......)))).)))))))))).....)))))).(((((......--------------))).)).. ( -28.20)
>DroSim_CAF1 35164 93 + 1
AACUGGCAAAUGUUAACCGAUGGCCCGAUUAGCUGUCAAACUGCAUAUUUGCAUAGCUAAUCAUUCAAUCGGUCGCCCAUUCAAU--------------UGGUGCAU
...((((....))))((((((.....((((((((((((((.......)))).)))))))))).....)))))).(((((......--------------))).)).. ( -28.20)
>DroYak_CAF1 36690 92 + 1
AACUGGUAAAUAUUAACCGAUUGC-CGAUUAGCUGUCCAACUGCAUAUUUGCAUAGCUAAUCACUCAAACGGUAGCUCAUUCAAU--------------UGGUGCAU
...............((((.(((.-.((((((((((.(((........))).))))))))))...))).)))).(((((......--------------))).)).. ( -23.10)
>DroAna_CAF1 41326 104 + 1
AACUGGUUA--GUUAGACAGUUAC-UGGCCAAGUGUCACAGUGCAUAUUUGCAUAGGUAAUCGCUCAAUUGACAGCCCGGAUAAUGGAUCGGAUACUGGCGGUGCAU
(((((....--......)))))((-((.(((.(((((...(((((....))))).(((....(((........)))(((.....)))))).)))))))))))).... ( -25.20)
>consensus
AACUGGCAAAUGUUAACCGAUGGC_CGAUUAGCUGUCAAACUGCAUAUUUGCAUAGCUAAUCACUCAAUCGGUCGCCCAUUCAAU______________UGGUGCAU
...............((((((.....(((((((((......((((....))))))))))))).....)))))).(((((....................))).)).. (-19.71 = -19.51 +  -0.20)

alignment

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secondary structure

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dotplot

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Window 0

Location 16,418,292 – 16,418,384
Length 92
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 79.25
Mean single sequence MFE -25.60
Consensus MFE -15.97
Energy contribution -16.53
Covariance contribution 0.56
Combinations/Pair 1.23
Mean z-score -1.66
Structure conservation index 0.62
SVM decision value 0.06
SVM RNA-class probability 0.563062
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16418292 92 - 22224390
AUGCACCA--------------AUUGAAUGGGCGACCGAUUGAGUGAUUAGCUAUGCAAAUAUGCAGUUUGACAGCUAAUCG-GCCAUCGGUUAACAUUUGCCAGUU
..((.(((--------------......)))))(((((((.(..(((((((((...(((((.....)))))..)))))))))-.).))))))).............. ( -28.40)
>DroSec_CAF1 38884 93 - 1
AUGCACCA--------------AUUGAAUGGGCGACCGAUUGAGUGAUUAGCUAUGCAAAUAUGCAGUUUGACAGCUAAUCGGGCCAUCGGUUAACAUUUGCCAGUU
..((.(((--------------......)))))(((((((.(..(((((((((...(((((.....)))))..)))))))))..).))))))).............. ( -30.00)
>DroSim_CAF1 35164 93 - 1
AUGCACCA--------------AUUGAAUGGGCGACCGAUUGAAUGAUUAGCUAUGCAAAUAUGCAGUUUGACAGCUAAUCGGGCCAUCGGUUAACAUUUGCCAGUU
..((.(((--------------......)))))(((((((.(..(((((((((...(((((.....)))))..)))))))))..).))))))).............. ( -30.50)
>DroYak_CAF1 36690 92 - 1
AUGCACCA--------------AUUGAAUGAGCUACCGUUUGAGUGAUUAGCUAUGCAAAUAUGCAGUUGGACAGCUAAUCG-GCAAUCGGUUAAUAUUUACCAGUU
........--------------..((((((....((((.(((..(((((((((.(.(((........))).).)))))))))-.))).))))...))))))...... ( -22.10)
>DroAna_CAF1 41326 104 - 1
AUGCACCGCCAGUAUCCGAUCCAUUAUCCGGGCUGUCAAUUGAGCGAUUACCUAUGCAAAUAUGCACUGUGACACUUGGCCA-GUAACUGUCUAAC--UAACCAGUU
.((((((((((((...((..((.......))..))...)))).)))........((((....))))..))).)).((((..(-((.........))--)..)))).. ( -17.00)
>consensus
AUGCACCA______________AUUGAAUGGGCGACCGAUUGAGUGAUUAGCUAUGCAAAUAUGCAGUUUGACAGCUAAUCG_GCCAUCGGUUAACAUUUGCCAGUU
..((.(((....................)))))(((((((.(..(((((((((.((((....)))).......)))))))))..).))))))).............. (-15.97 = -16.53 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:08 2006