Locus 6567

Sequence ID X_DroMel_CAF1
Location 16,417,467 – 16,417,560
Length 93
Max. P 0.816953
window10728

overview

Window 8

Location 16,417,467 – 16,417,560
Length 93
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.76
Mean single sequence MFE -18.98
Consensus MFE -11.32
Energy contribution -11.45
Covariance contribution 0.13
Combinations/Pair 1.14
Mean z-score -1.90
Structure conservation index 0.60
SVM decision value 0.67
SVM RNA-class probability 0.816953
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16417467 93 + 22224390
UGAGUUUGAAUGAAACAACUAAAUAAAUUCCCCUG--------------------UUG-------AUUAAAGCAUAUAAACUUUAAAACUUUAGGGUUUAUUUGCAGCAGCGAGCUUUAU
.(((((((.......((((...............)--------------------)))-------......(((.(((((((((((....))))))))))).))).....)))))))... ( -19.96)
>DroSec_CAF1 38071 100 + 1
CAAGUUUGAAUGAAACAACUAAAUAAAUUCCCUUA--------------------UCGCAUUCGAAUUCAAGCACAUAAACUUUAAAACUUUAGGGUUUAUUUGCAGCAACGAUCUUUAU
..((((((((((.......................--------------------...))))))))))...(((.(((((((((((....))))))))))).)))............... ( -17.97)
>DroSim_CAF1 34344 100 + 1
CAAGUUUGAAUGAAACAACUAAAUAAAUUCCCUUA--------------------UCGCAUUCGAAUUCAAGCACAUAAACCUAAAAACUUUAGGGUUUAUUUGCAGCAACGAUCUUUAU
..((((((((((.......................--------------------...))))))))))...(((.((((((((..........)))))))).)))............... ( -17.27)
>DroYak_CAF1 35881 117 + 1
CGAAUUUAAAUGAUACAAAUAAACAAAUUCUCUUGUGGUGAUUUAAUAACUGAAAUCCCAUUCGAGUUCUAGCAUAUAAACUUUAAAACUUUAGGGUUUAAUUGU---AACGAGCUUUAU
(((((.................((((......))))((.(((((........))))))))))))(((((..(((..((((((((((....))))))))))..)))---...))))).... ( -20.70)
>consensus
CAAGUUUGAAUGAAACAACUAAAUAAAUUCCCUUA____________________UCGCAUUCGAAUUCAAGCACAUAAACUUUAAAACUUUAGGGUUUAUUUGCAGCAACGAGCUUUAU
.......................................................................(((.(((((((((((....))))))))))).)))............... (-11.32 = -11.45 +   0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:06 2006