| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,417,119 – 16,417,235 |
| Length | 116 |
| Max. P | 0.989935 |
| Location | 16,417,119 – 16,417,235 |
|---|---|
| Length | 116 |
| Sequences | 4 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.01 |
| Mean single sequence MFE | -23.90 |
| Consensus MFE | -14.76 |
| Energy contribution | -14.95 |
| Covariance contribution | 0.19 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.62 |
| SVM decision value | 2.19 |
| SVM RNA-class probability | 0.989935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16417119 116 + 22224390 AAAAAAAACGAAGAUGGAAAUAACAUCUUGCGGAAUUUCAAGCAUUGUUA-AACAAGCUACGCAUGAAAUGCAAUGUUUUUU-UUGCGCAUUUUAACAGUGCUCUAUGCUGAAUACUU ........((((((((.......)))))).))....((((((((((((((-((...((...(((.(((((.....)))))..-.)))))..))))))))))))......))))..... ( -25.70) >DroSec_CAF1 37723 114 + 1 CAA--AAACGAAGAUGGAAAAAACAUCUUGCGGAAUUUCAAGCAUUGUUAAAACAAGCUAUGCAUGAAAUGCAAUGUUUUUUUUUGCGCAUUUUUACAAUGC--UAUGUUCAAUACUU ...--....(((.(((((((((((((..(((...((((((.((((.(((......))).)))).)))))))))))))))))))....(((((.....)))))--))).)))....... ( -26.30) >DroSim_CAF1 34017 93 + 1 CAA--AAACGAAGAUGGAAAAAACAUCUUGCGGAAUUUCAAGCAUUGUUAAAACAAGCUAUGCAUGAAAUGCAAUGUUUUUU-----------------------GUGCUCAAUACUU (((--(((((((((((.......)))))).))(.((((((.((((.(((......))).)))).)))))).).....)))))-----------------------)............ ( -20.40) >DroYak_CAF1 35534 111 + 1 CAA--AAACGAAGGUGGAACAAACAUUUUACGGAAUUUCAAGCCUUGUUCAAACAAGCUAUAUAUGAAAUGUUAUGUUCCU---UGCCUUUUUUAACAAUGC--AAUGCCCACAAACA ...--....(((((((((((((((((((((..(.....).(((.((((....))))))).....))))))))).)))))).---.))))))...........--.............. ( -23.20) >consensus CAA__AAACGAAGAUGGAAAAAACAUCUUGCGGAAUUUCAAGCAUUGUUAAAACAAGCUAUGCAUGAAAUGCAAUGUUUUUU__UGCGCAUUUUAACAAUGC__UAUGCUCAAUACUU ........((((((((.......)))))).))..((((((.((((.(((......))).)))).))))))................................................ (-14.76 = -14.95 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:05 2006