Locus 6565

Sequence ID	X_DroMel_CAF1
Location	16,416,890 – 16,417,003
Length	113
Max. P	0.550119

overview

Window 6

Location	16,416,890 – 16,417,003
Length	113
Sequences	4
Columns	114
Reading direction	reverse
Mean pairwise identity	87.46
Mean single sequence MFE	-26.98
Consensus MFE	-17.49
Energy contribution	-18.93
Covariance contribution	1.44
Combinations/Pair	1.07
Mean z-score	-1.83
Structure conservation index	0.65
SVM decision value	0.03
SVM RNA-class probability	0.550119
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16416890 113 - 22224390
UAAGUUUAAAGUAACGUUUGUUUGCCACGGAAUGUCAAUAUUUUUGUUGGCACUGCACAGGCGUACGUUUAAUAUAUGU-AUGUUCUGUAUGUACAACUAUGUGCAUGAUAACA
.....((((((((.(((((((.((((((((((.........))))).)))))....)))))))))).))))).......-.((((...((((((((....))))))))..)))) ( -27.30)
>DroSec_CAF1 37493 114 - 1
AAAGUUUAAAGGAACGUUUGUUUGCCACGGAAUGUCAAUAUUUUUGUUGGCACUGCACAGGCUCACGUUUAAUAUAUGUUCUGUUCUGUACGUACAACUAUGUUCAUAAUAACA
...(((.....((((((..((((((.(((((.((((((((....))))))))....(((((...((((.......))))))))))))))..))).))).)))))).....))). ( -25.40)
>DroSim_CAF1 33788 109 - 1
AAAGUUUAAAGGAACGUUUGUUUGCCACGGAAUGUCAAUAUUUUUGUUGGCACUGCACAGGCGUUCGUUUAAUAUAUGUU-----CUGUACGUACAACUAUGUUCAUGAUAACA
.....(((((.((((((((((.((((((((((.........))))).)))))....)))))))))).)))))....((((-----.((.(((((....))))).)).))))... ( -29.00)
>DroYak_CAF1 35319 105 - 1
AAAGUUUAAAGGAACGCUUGCUUGCCACGUUAUGUCAAUAUUUUUGUUGGCCAUGCACUGGCGUACGUUUAAUAUA---------CUGUUCGUACAACUUUGUUCAUGAUAACA
...(((.....((((........((((.((((((((((((....)))))).)))).))))))(((((..((.....---------.))..)))))......)))).....))). ( -26.20)
>consensus
AAAGUUUAAAGGAACGUUUGUUUGCCACGGAAUGUCAAUAUUUUUGUUGGCACUGCACAGGCGUACGUUUAAUAUAUGU______CUGUACGUACAACUAUGUUCAUGAUAACA
...(((.....((((((......(((.(((..((((((((....)))))))))))....)))((((((.....................))))))....)))))).....))). (-17.49 = -18.93 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:17:04 2006