Locus 6562

Sequence ID X_DroMel_CAF1
Location 16,412,620 – 16,412,738
Length 118
Max. P 0.998263
window10719

overview

Window 9

Location 16,412,620 – 16,412,738
Length 118
Sequences 4
Columns 119
Reading direction forward
Mean pairwise identity 92.83
Mean single sequence MFE -26.05
Consensus MFE -25.57
Energy contribution -24.88
Covariance contribution -0.69
Combinations/Pair 1.14
Mean z-score -3.05
Structure conservation index 0.98
SVM decision value 3.05
SVM RNA-class probability 0.998263
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16412620 118 + 22224390
-UAACGGCCAAACAUAAUCGGAAAGAGCAUCAAAAUGAGUGUAACAACAACACUCAGCAAAGUUUCCGUCAUACAGCAUAAAAUACUUUGGCCAACAACUUUGCAAAAUGCUGCCAACA
-....(((.........((.....))((((.....(((((((.......)))))))((((((((...((((.................))))....))))))))...)))).))).... ( -27.23)
>DroSec_CAF1 33261 118 + 1
-UAACGGCCAAACACAAUCGGAAAGGGCAUCAAAAUGAGUGUAACAACAACACUCAGCAAAGUUUUCGUCAUACUGCAUAAAAUACUUUGGCCAACAACUUUGCAAAAUGCUGCCAACA
-........................((((.((...(((((((.......)))))))((((((((((.((((.................)))).)).))))))))....)).)))).... ( -27.23)
>DroSim_CAF1 29491 118 + 1
-UAACGGCCAAACAUAAUCGGAAAGGGCAUCAAAAUGAGUGUAACAACAACACUCAGCAAAGUUUCCGUCAUACAGCAUAAAAUACUUUGGCCAACAACUUUGCAAAAUGCUGCCAACA
-........................((((.((...(((((((.......)))))))((((((((...((((.................))))....))))))))....)).)))).... ( -26.93)
>DroYak_CAF1 31284 119 + 1
UAAAUGGCUUAACAUCAUCUGAAAGGGUAUCAAAAUGAGUGAAACAACAACACUUAGCAAAGUUUCCGUCGUACAGCAUAAAAUACUUUGGCCAACAACUUUGCAAAAUACUGCCAGCA
....((((........((((....)))).......((((((.........))))))((((((((.(((..(((..........)))..))).....))))))))........))))... ( -22.80)
>consensus
_UAACGGCCAAACAUAAUCGGAAAGGGCAUCAAAAUGAGUGUAACAACAACACUCAGCAAAGUUUCCGUCAUACAGCAUAAAAUACUUUGGCCAACAACUUUGCAAAAUGCUGCCAACA
.....(((..........(.....)(((((.....(((((((.......)))))))((((((((...((((.................))))....))))))))...)))))))).... (-25.57 = -24.88 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:58 2006