Locus 6558

Sequence ID X_DroMel_CAF1
Location 16,406,391 – 16,406,482
Length 91
Max. P 0.533511
window10708

overview

Window 8

Location 16,406,391 – 16,406,482
Length 91
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 66.67
Mean single sequence MFE -13.78
Consensus MFE -7.32
Energy contribution -7.58
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.36
Structure conservation index 0.53
SVM decision value -0.00
SVM RNA-class probability 0.533511
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16406391 91 + 22224390
GACUUAGAUGUUCAAGUUUAAGGACUUUUAAGA--AGAGCACAAAUAAUUGGAUAAAUGAUAAUGAAAAUGUU-----------CAAGAGACUCUUAAAUGGGA
..((((((.((((........)))).))))))(--(((((.(((....)))......(((..((....))..)-----------))...).)))))........ ( -13.20)
>DroSec_CAF1 27151 72 + 1
GCCUUAGAAGUUCAAGUUUAAGGACUUUUAAAA-UAAGGCACAAAUAAUUGAAUAAAUGAUAAUGGAAAUGUU-------------------------------
(((((((((((((........))))))).....-)))))).................................------------------------------- ( -12.90)
>DroSim_CAF1 24073 71 + 1
GCCUUAGAAGUUCAAGUUUAAGGACUUUUAAAA--AAGGCACAAAUAAUUGGAUAAAUGAUAAUGGAAAUGUU-------------------------------
(((((((((((((........)))))))))...--.)))).................................------------------------------- ( -13.00)
>DroYak_CAF1 25090 99 + 1
GCCUUAGAAGUUCAAGUUUAGGGACUUUUAAUAACAAGACACAAAUAAUCGAAUGAGU-----UGGACACUUUAUCUAUUUUGUAAAUAGACUCACAAAUGGUA
(((((((((((((........))))))))))......................(((((-----(..(((............))).....)))))).....))). ( -16.00)
>consensus
GCCUUAGAAGUUCAAGUUUAAGGACUUUUAAAA__AAGGCACAAAUAAUUGAAUAAAUGAUAAUGGAAAUGUU_______________________________
...((((((((((........))))))))))......................................................................... ( -7.32 =  -7.58 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:49 2006