Locus 6557

Sequence ID X_DroMel_CAF1
Location 16,406,159 – 16,406,249
Length 90
Max. P 0.988314
window10707

overview

Window 7

Location 16,406,159 – 16,406,249
Length 90
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 75.45
Mean single sequence MFE -29.18
Consensus MFE -5.42
Energy contribution -7.18
Covariance contribution 1.76
Combinations/Pair 1.18
Mean z-score -2.41
Structure conservation index 0.19
SVM decision value 2.11
SVM RNA-class probability 0.988314
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16406159 90 - 22224390
UUACAAUUGACAUGGCGAUGGAGG-----------------CAGAAACACAUGUGUGC-AAUAU-------GUGUGGCU-GUG--UGUUCAUUACGCGGUCAA-ACUGUU-UUAUUUGCA
..............((((..((((-----------------(((..((((((((....-.))))-------))))((((-(((--((.....)))))))))..-.)))))-))..)))). ( -31.70)
>DroSec_CAF1 26917 92 - 1
UUACAAUUGACAUGGCGAUGGAGG-----------------CAGAAACACAUGUGUGC-ACUAU-------GUGUGGCU-GUGUGUGUUCAUUACGCGGUCAA-ACUGUU-UUAUUUGCA
..............((((..((((-----------------(((..((((((((....-)).))-------))))((((-(((((.......)))))))))..-.)))))-))..)))). ( -29.30)
>DroSim_CAF1 23839 92 - 1
UUACAAUUGACAUGGCGAUGGAGG-----------------CAGAAACACAUGUGUGC-AGUAU-------GUGUGGCU-GUGUGUGUUCAUUACGCGGUCAA-ACUGUU-UUAUUUGCA
..............((((..((((-----------------(((..(((((((.....-..)))-------))))((((-(((((.......)))))))))..-.)))))-))..)))). ( -28.70)
>DroYak_CAF1 24847 100 - 1
UUACAAUUGACAUGGCGAUGGAGG-----------------CAGAAACACAUGUGUGCCAGUAUAUGCCGUGUGUGCGC-GGCUGUGUUCAUUACGCGGUCAA-ACUGUU-UUAUUUGCA
..............((((..((((-----------------(((...((((..((.((........))))..))))...-((((((((.....))))))))..-.)))))-))..)))). ( -31.20)
>DroAna_CAF1 27656 117 - 1
UGGCCAUAGCCACUGCAAUUGAAAUAAAUAGCAUUGCAGUACAGAAAAAAAAAUAAAACAGAAUA---CAUGUGACGCUAAAGUGUGUUCAUUACGUGGUCAAAACUGUUUUUAUUUGCA
.(((....)))((((((((.............))))))))..........(((((((((((....---((((((((((......)))))....))))).......))).))))))))... ( -25.02)
>consensus
UUACAAUUGACAUGGCGAUGGAGG_________________CAGAAACACAUGUGUGC_AGUAU_______GUGUGGCU_GUGUGUGUUCAUUACGCGGUCAA_ACUGUU_UUAUUUGCA
..............((((.............................(((....))).................(((((.(((((.......)))))))))).............)))). ( -5.42 =  -7.18 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:48 2006