| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,405,548 – 16,405,654 |
| Length | 106 |
| Max. P | 0.500000 |
| Location | 16,405,548 – 16,405,654 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 75.12 |
| Mean single sequence MFE | -27.18 |
| Consensus MFE | -17.34 |
| Energy contribution | -18.62 |
| Covariance contribution | 1.29 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16405548 106 + 22224390 -----AUGUCUUCAUUUUGUACGA------AGCUCGGCUCACAUGUCGGCGUAAUUAUAUAAGCACUCGUUACUGAAAUCUCCCGAGUGCAAUAAUGUGCAGAAUGUGCAACGUUGG -----.(((...(((((((((((.------.((.((((......))))))............(((((((..............))))))).....))))))))))).)))....... ( -32.14) >DroVir_CAF1 26895 97 + 1 CACUCACACACUUAU-AUAUAUA------ACAUCCAACUCUCAUGUCGGAGUAAUUACAUCAGCACUUGUUAUU-AAAUCUCAUG--UGGUAAAAUGGUCGCCUGGC---------- ......((((.....-....(((------((((((.((......)).)))((....)).........)))))).-........))--))..................---------- ( -10.67) >DroSec_CAF1 26288 106 + 1 -----AUGUCUUCAUUUUGUAUGA------AGCUCGGCUCACAUGUCGGCGUAAUUAUAUAAGCACUCGUUACUGAAAUCUCCCGAGUGCAAUAAUGUGCAGAAUGUGCAACGUUGG -----.(((...((((((((((..------.((.((((......))))))............(((((((..............)))))))......)))))))))).)))....... ( -29.74) >DroSim_CAF1 23217 106 + 1 -----AUGUCUUCAUUUUGUAUGA------AGCUCGGCUCACAUGUCGGCGUAAUUAUAUAAGCACUCGUUACUCAAAUCUCCCGAGUGCAAUAAUGUGCAGAAUGUGCAACGUUGG -----.(((...((((((((((..------.((.((((......))))))............(((((((..............)))))))......)))))))))).)))....... ( -29.74) >DroYak_CAF1 22951 106 + 1 -----AUGUCUUCAUUUUGUAUGA------AGCACGGCUCACAUGUCGGCGUAAUUAUAUAAGCACUCGUUACUGAAAUCUCCCGAGUGCAAUAAUGUGCAGAAUGUGCAACGGUGG -----.(((...((((((((((..------.((.((((......))))))............(((((((..............)))))))......)))))))))).)))....... ( -29.74) >DroAna_CAF1 25880 111 + 1 -----AUAUAUUCCC-AUAUAUGCCGCCCGGGCACGGCUCACAUGUCGGGGUAAUUAUAUCAGCACUCGUUACUCGAAUCUCCCGAGUGCAAUAUUGGGCUUUGGAUGCAACGUGUG -----........((-(.....(((((((.((((.(.....).)))).))))..........(((((((..............))))))).......)))..)))............ ( -31.04) >consensus _____AUGUCUUCAUUUUGUAUGA______AGCUCGGCUCACAUGUCGGCGUAAUUAUAUAAGCACUCGUUACUGAAAUCUCCCGAGUGCAAUAAUGUGCAGAAUGUGCAACGUUGG ............(((((((((((........((.((((......))))))............(((((((..............))))))).....)))))))))))........... (-17.34 = -18.62 + 1.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:47 2006