| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,403,381 – 16,403,478 |
| Length | 97 |
| Max. P | 0.798102 |
| Location | 16,403,381 – 16,403,478 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 91.52 |
| Mean single sequence MFE | -19.80 |
| Consensus MFE | -17.17 |
| Energy contribution | -17.33 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.798102 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16403381 97 - 22224390 AAGGAAUGACAGCCAGUCAGCCAGCUACCAACAAAAAUGUGUUGUGUGUGCAUGUAUGCACAAUUGCGAAACACUGCAAUUAAUCAAAAAAAAAAAA ..((..((((.....)))).))....(((((((......))))).))(((((....)))))(((((((......)))))))................ ( -21.20) >DroSec_CAF1 24270 89 - 1 AAGGAAUGACAGCCAGUCAGCCAGCUACCAACAAAAAUGUGUUGUGUGUG--------CACAAUUGCGAAACACUGCAAUUAAUCAAAGCAAAGAAA ..((..((((.....)))).)).((((((((((......))))).))).)--------)..(((((((......)))))))................ ( -19.20) >DroSim_CAF1 21211 89 - 1 AAGGAAUGACAGCCAGUCAGCCGGCUACCAACAAAAAUGUGUUGUGUGUG--------CACAAUUGCGAAACACUGCAAUUAAUCAAAGCAAAGAAA ..((..((((.....)))).)).((((((((((......))))).))).)--------)..(((((((......)))))))................ ( -19.00) >consensus AAGGAAUGACAGCCAGUCAGCCAGCUACCAACAAAAAUGUGUUGUGUGUG________CACAAUUGCGAAACACUGCAAUUAAUCAAAGCAAAGAAA ..((..((((.....)))).))....(((((((......))))).))((((......))))(((((((......)))))))................ (-17.17 = -17.33 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:46 2006