Locus 6551

Sequence ID X_DroMel_CAF1
Location 16,400,169 – 16,400,261
Length 92
Max. P 0.694674
window10698

overview

Window 8

Location 16,400,169 – 16,400,261
Length 92
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 83.25
Mean single sequence MFE -30.23
Consensus MFE -16.73
Energy contribution -17.60
Covariance contribution 0.87
Combinations/Pair 1.07
Mean z-score -2.50
Structure conservation index 0.55
SVM decision value 0.34
SVM RNA-class probability 0.694674
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16400169 92 + 22224390
ACAUAUGUAGCUGCAG--------CUGUA---------GCUGGUGCUAACUGACUUAGAAUUAUCCAUUGAUUGAAUUCGCAUUUGCAUUGGCCGCUGCUGCUGCCGCG
......(..((.((((--------(.(..---------((..((((.((.((.....((((((((....)))..))))).)).))))))..))..).))))).))..). ( -30.90)
>DroSec_CAF1 21082 92 + 1
ACAUAUGUAGCUGCAG--------CUGUA---------GCUGGUGCUAACUGACUUAGAAUUAUCCAUUGAUUGAAUUCGCAUUUGCAUUGGCCGCUGCUGCUGCCGCG
......(..((.((((--------(.(..---------((..((((.((.((.....((((((((....)))..))))).)).))))))..))..).))))).))..). ( -30.90)
>DroYak_CAF1 17711 89 + 1
---UAUGUAGCUGCAG--------CUGUG---------GCUGGUGCUAACUGACUUAGAAUUAUCCAUUGAUUGAAUUCGCAUUUGCAUUGGCCGCUGCUGCUGCCGCG
---...(..((.((((--------(.(((---------((..((((.((.((.....((((((((....)))..))))).)).))))))..))))).))))).))..). ( -36.20)
>DroAna_CAF1 18518 109 + 1
CCAUUAGCAGCUGCACAUCCAGCUCUGUAUCCUUCCUUCCUGCUCCUUCCUGACUUAGAAUUAUCCAUUGAUUGCAUUCGCAUUUGCGUUGGCCGCUGCUGCUGCCGCC
....(((((((.((....(((((..................................((((.(((....)))...))))((....)))))))..)).)))))))..... ( -22.90)
>consensus
ACAUAUGUAGCUGCAG________CUGUA_________GCUGGUGCUAACUGACUUAGAAUUAUCCAUUGAUUGAAUUCGCAUUUGCAUUGGCCGCUGCUGCUGCCGCG
......(((((.((((......................((((((((....((.....((((((((....)))..))))).))...))))))))..)))).))))).... (-16.73 = -17.60 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:39 2006