Locus 6549

Sequence ID X_DroMel_CAF1
Location 16,396,208 – 16,396,311
Length 103
Max. P 0.610583
window10695

overview

Window 5

Location 16,396,208 – 16,396,311
Length 103
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 95.73
Mean single sequence MFE -18.80
Consensus MFE -16.90
Energy contribution -17.40
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.59
Structure conservation index 0.90
SVM decision value 0.16
SVM RNA-class probability 0.610583
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16396208 103 - 22224390
UUCGGUGACCUCAGAAGAGGACCCAGCAAAAAUGCGAAAACCA-UACCAAAAGCAAAGGAAAAUAACACUUUUUAUCGGUACAUUUUCUACUACACCAUA----UAUG
...((((.((((....)))).....(((....)))(((((...-((((......((((..........)))).....))))..))))).....))))...----.... ( -19.30)
>DroSec_CAF1 17246 103 - 1
UUCGGUGACCUCAGAAGAGGACCCAGCAAAAAUGCGAAAACCA-UACCAAAAGCAAAGGAAAAUAACACUUUUUAUCGGUACAUUUUCUACUACACCAUA----UAUG
...((((.((((....)))).....(((....)))(((((...-((((......((((..........)))).....))))..))))).....))))...----.... ( -19.30)
>DroSim_CAF1 15630 103 - 1
UUCGGUGACCUCAGAAGAGGACCCAGCAAAAAUGCGAAAACCA-UACCAAAAGCAAAGGAAAAUAACACUUUUUAUCGGUACAUUUUCUACUACACCAUA----UAUG
...((((.((((....)))).....(((....)))(((((...-((((......((((..........)))).....))))..))))).....))))...----.... ( -19.30)
>DroYak_CAF1 13676 108 - 1
UUCGGUGACCUCAGAAGAGAAGCCAGCAAAAAUGCGAAAACCAAAACCAAAAGCAAAGGGAAAUAACACUUUUUAUCGGUACAUUUUCUACUACACCAUAUGUAUAUG
...((((.....((((((...(((.(((....)))...................((((((........))))))...)))...))))))....))))........... ( -17.30)
>consensus
UUCGGUGACCUCAGAAGAGGACCCAGCAAAAAUGCGAAAACCA_UACCAAAAGCAAAGGAAAAUAACACUUUUUAUCGGUACAUUUUCUACUACACCAUA____UAUG
...((((.((((....)))).....(((....)))(((((....((((......((((..........)))).....))))..))))).....))))........... (-16.90 = -17.40 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:36 2006