| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,377,723 – 16,377,843 |
| Length | 120 |
| Max. P | 0.529667 |
| Location | 16,377,723 – 16,377,843 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.55 |
| Mean single sequence MFE | -36.32 |
| Consensus MFE | -27.93 |
| Energy contribution | -29.82 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.77 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529667 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16377723 120 - 22224390 AAUUUAACGAGAAGGGGACCACUGUAGGUUCCCCCGGUGAAGGUAAAGAGCAAAAAACACCUUCGCCGACCGCAAACUCCGAAUUAAGCACUGAAACAGAAGUGUUGAAGCCCACCGAUG ........(((..(((((((......))))))).((((((((((..............))))))))))........))).......((((((........)))))).............. ( -35.74) >DroSec_CAF1 4663 117 - 1 ACUUCAACGUGGAGGGGACCAGUGUAAGUUCCUCCGGUGAAGGUAAAGAGCAA---ACACCUUCGCCGACCGCGAACUCUGAUUUAAGCACAGACCCGGAAGUGUUGAAGCCCACCAAUG .(((((((((((.((((((........)))))).((((((((((.........---..)))))))))).))))....((((.........))))..(....).))))))).......... ( -37.60) >DroSim_CAF1 535 117 - 1 ACAUCAACGUGGAGGAGACCAGUGUAGGUACCUCCGGUGAAGGGAAAGAGCAA---ACACCUUCGCCGACCGCGAACUCUAAUUUAAACACUGACCCGGAAGUGUUGAAGCCCACCAAUG ...((..(((((.(((((((......)))..))))((((((((..........---...))))))))..)))))............((((((........))))))))............ ( -35.62) >consensus ACUUCAACGUGGAGGGGACCAGUGUAGGUUCCUCCGGUGAAGGUAAAGAGCAA___ACACCUUCGCCGACCGCGAACUCUGAUUUAAGCACUGACCCGGAAGUGUUGAAGCCCACCAAUG .......(((((.(((((((......))))))).(((((((((................))))))))).)))))............((((((........)))))).............. (-27.93 = -29.82 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:21 2006