| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,371,228 – 16,371,319 |
| Length | 91 |
| Max. P | 0.983533 |
| Location | 16,371,228 – 16,371,319 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 74.60 |
| Mean single sequence MFE | -24.15 |
| Consensus MFE | -13.99 |
| Energy contribution | -16.25 |
| Covariance contribution | 2.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.58 |
| SVM decision value | 1.95 |
| SVM RNA-class probability | 0.983533 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16371228 91 + 22224390 UUGCGCCACCCACUUACCACCUUGCCCCAUCUCAUCCC---UAUGCCCUCCCUAUUCGCUCAAGUGCAAUUGCACUGGCAUUGGGGCAAAAGAC------ .....................((((((((.........---.(((((...............(((((....)))))))))))))))))).....------ ( -22.96) >DroSec_CAF1 43928 87 + 1 UUGCACCACCCACCAUCCACGUUGCCCCACCUCACCCCCCUCAUGCCG-------UCGCUCAAGUGCAGUUGCACUGGCAUUGGGGCAAAAGAC------ .....................((((((((.............((((((-------.....).(((((....)))))))))))))))))).....------ ( -24.11) >DroSim_CAF1 31944 87 + 1 UUGCAACACCCACCAUCCACGUUGCCCCAUCUCAUACCCCUCAUGCCG-------UCACUCAAGUGCAGUUGCACUGGCAUUGGGGCAAAAGAC------ ..(((((.............)))))....(((....((((..((((((-------.....).(((((....)))))))))).))))....))).------ ( -24.72) >DroEre_CAF1 29528 84 + 1 UUGCACCACCCACUGGUAACC---CGC---CGCACCCCGCUC---CC-------UUCGUCCAAGUGCAGUUGCACUGGCAUUGGGGCAAAAGACCAGCGA ..........(.(((((....---.((---(((.....))..---((-------...(.(((.((((....))))))))...))))).....))))).). ( -24.80) >consensus UUGCACCACCCACCAUCCACCUUGCCCCAUCUCACCCCCCUCAUGCCG_______UCGCUCAAGUGCAGUUGCACUGGCAUUGGGGCAAAAGAC______ .....................((((((((.............(((((...............(((((....))))))))))))))))))........... (-13.99 = -16.25 + 2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:18 2006