Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 16,366,146 – 16,366,241 |
Length | 95 |
Max. P | 0.999916 |
Location | 16,366,146 – 16,366,241 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 96.42 |
Mean single sequence MFE | -32.66 |
Consensus MFE | -31.38 |
Energy contribution | -31.98 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.60 |
Structure conservation index | 0.96 |
SVM decision value | 4.54 |
SVM RNA-class probability | 0.999916 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16366146 95 + 22224390 AGACACAGAGAGGCGCACUAGGCGUAUACGCAAUCGUUGCUGGUUGCGGCCACAUCAAGUAUACGCCAUGGCUAACACGCGCUUUUGCACAAUUA ........((((((((....((((((((((((((((....)))))))(....).....))))))))).((.....)).))))))))......... ( -33.60) >DroSec_CAF1 38950 95 + 1 AGACACAGAGAGGCGCACUAGGCGUAUACGCAAUCGUUGCUGGUUGCGGCCACAUCAAGUAUACGCCAUGUCUAACACGCGCUUUUGCACAAUUA ........((((((((....((((((((((((((((....)))))))(....).....))))))))).((.....)).))))))))......... ( -33.10) >DroSim_CAF1 26900 95 + 1 AGACACAGAGAGGCGCACUAGGCGUAUACGCAAUCGUUGCUGGUUGCGGCCACAUCAAGUAUACGCCAUGUCUAACACGCGCUUUUGCACAAUUA ........((((((((....((((((((((((((((....)))))))(....).....))))))))).((.....)).))))))))......... ( -33.10) >DroEre_CAF1 24668 95 + 1 AGGCACAGAGCGGCGCACUAGGCGUAUACGCAAUCGUUGCUGCUUGCGGCCACAUCAAGUAUACGCCUUGGCUAACACGCGCUUUUACACAAUUA ..((.....))(((((...((((((((((......((.((((....)))).)).....))))))))))((.....)).)))))............ ( -30.60) >DroYak_CAF1 23779 95 + 1 AAACACAGAGAGGCGCACUAGGCGUAUACGCAAUCGUUGCUGGUUGCGGCCACAUCAAGUAUACGCCAUGGCUAACACGCGCUUUAGCACAAUUA .........(((((((....((((((((((((((((....)))))))(....).....))))))))).((.....)).))))))).......... ( -32.90) >consensus AGACACAGAGAGGCGCACUAGGCGUAUACGCAAUCGUUGCUGGUUGCGGCCACAUCAAGUAUACGCCAUGGCUAACACGCGCUUUUGCACAAUUA ........((((((((....((((((((((((((((....)))))))(....).....))))))))).((.....)).))))))))......... (-31.38 = -31.98 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:15 2006