Locus 6535

Sequence ID X_DroMel_CAF1
Location 16,364,088 – 16,364,179
Length 91
Max. P 0.705128
window10668

overview

Window 8

Location 16,364,088 – 16,364,179
Length 91
Sequences 5
Columns 110
Reading direction reverse
Mean pairwise identity 80.37
Mean single sequence MFE -32.56
Consensus MFE -25.30
Energy contribution -25.74
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.57
Structure conservation index 0.78
SVM decision value 0.36
SVM RNA-class probability 0.705128
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16364088 91 - 22224390
-------CACCAG----------CCUUCCAUCGUGCUCACCAGCUUGUCCCGGGGCGAAGGCUCCGCAGGACCCCCAUA-CCAUUGCAUCCCAUGGAGAGGGACGGA-AG
-------......----------.(((((.....(((....)))..((((((((((....)))))...((....))...-((((........))))...))))))))-)) ( -31.90)
>DroSec_CAF1 36897 90 - 1
-------CACCAG----------CCUUCCACCUUGCCCACCAGCUUGUCCCGGGGCGAAGGCUCCGCAGGACCCCCAUC-CCAUUGCAUCCCAUGGAGAGGGA-GGC-AG
-------.....(----------((((((.................((((((((((....))))))..)))).....((-((((........)))).))))))-)))-.. ( -34.70)
>DroSim_CAF1 25251 91 - 1
-------CACCAG----------CCAUCCACCUUGCCCACCAGCUUGUCCCGGGGCGAAGGCUCCGCAGGACCCCCAUCUCCAUUGCAUCCCAUGGAGAGGGA-GGU-UG
-------...(((----------((.....................((((((((((....))))))..)))).(((.(((((((........)))))))))).-)))-)) ( -37.40)
>DroEre_CAF1 22593 102 - 1
CAGCAACCAUCAAACAGCAAACACCAACCA------CCACCAGCUUGUCCCGGGGCGAAGGCUCCGCAGGACCCCCAUC-CCAUUGCAUCCCAUGGCGAGGGA-GGAGAG
.........((...................------..........((((((((((....))))))..))))..((.((-((.((((........))))))))-)).)). ( -29.60)
>DroYak_CAF1 21595 85 - 1
-----------------------CCUUCCAUCUUGCCCACCAGCUUGUCCCGGAGCGAAGGCUCCGCAGGACCCCCAUA-CCAUUGCAUCCCAUGGAGAGGUA-GGUGUU
-----------------------..............((((.((((((((((((((....))))))..)))).......-((((........))))..)))).-)))).. ( -29.20)
>consensus
_______CACCAG__________CCUUCCACCUUGCCCACCAGCUUGUCCCGGGGCGAAGGCUCCGCAGGACCCCCAUC_CCAUUGCAUCCCAUGGAGAGGGA_GGA_AG
.......................................((.....((((((((((....))))))..)))).(((.((.((((........)))).)))))..)).... (-25.30 = -25.74 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:10 2006