Locus 6534

Sequence ID X_DroMel_CAF1
Location 16,358,091 – 16,358,211
Length 120
Max. P 0.922476
window10667

overview

Window 7

Location 16,358,091 – 16,358,211
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 95.00
Mean single sequence MFE -41.23
Consensus MFE -37.47
Energy contribution -37.37
Covariance contribution -0.11
Combinations/Pair 1.06
Mean z-score -2.50
Structure conservation index 0.91
SVM decision value 1.15
SVM RNA-class probability 0.922476
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16358091 120 + 22224390
GGGGCCUUCUUGCACACUGGGUUCUCCACCAGAGGAGCCUCCCACUCGCCAUCGAUUUCGGAAUUCCAAUCUUCGGGUUCGAUGGCAGUUGGAUCGAAAAUCAUGUCGGGCUCAUCCUCU
((((............((((........))))..((((((((.(((.((((((((.((((((.........)))))).))))))))))).))).(((........))))))))..)))). ( -44.40)
>DroSec_CAF1 25469 120 + 1
GGAGCGUUCUUGCACACUGGGUUCUCCACCAGAGGAGCCUCCCACUCGCCAUCGAUUUCGUUAUUCCAAUCUUCUGGUUUGAUGGCAGUUGGAUCGAAAAUCAAAUCGGGCUCAUCCUCU
((((((....)))...((((........))))..((((((((.(((.((((((((..........(((......))).))))))))))).))).(((........)))))))).)))... ( -39.00)
>DroSim_CAF1 19755 120 + 1
GGAGCGUUCUUGCACACUGGGUUCUCCACCAGAGGAGCCUCCCACUCGCCAUCGAUUUCGUUAUUCCAAUCUUUUGGUUUGAUGGCAGUUGGAUCGAAAAUCAAAUCGGGCUCAUCCUCU
((((((....)))...((((........))))..((((((((.(((.((((((((..........((((....)))).))))))))))).))).(((........)))))))).)))... ( -40.30)
>consensus
GGAGCGUUCUUGCACACUGGGUUCUCCACCAGAGGAGCCUCCCACUCGCCAUCGAUUUCGUUAUUCCAAUCUUCUGGUUUGAUGGCAGUUGGAUCGAAAAUCAAAUCGGGCUCAUCCUCU
((((((....)))...((((........))))..((((((((.(((.((((((((..........((........)).))))))))))).))).(((........)))))))).)))... (-37.47 = -37.37 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:10 2006