| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,355,958 – 16,356,059 |
| Length | 101 |
| Max. P | 0.500000 |
| Location | 16,355,958 – 16,356,059 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 73.45 |
| Mean single sequence MFE | -26.23 |
| Consensus MFE | -18.00 |
| Energy contribution | -18.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.87 |
| Structure conservation index | 0.69 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16355958 101 - 22224390 AUGGCGCCUCGGAUAUAGUUGUAGCUUUAAUGUAGCAGGCGACAUCCAUGUGCCUCAUGUAAGUAA-GACCACA---------UAGAAUAUAGUUGUAAGUGGGA-GGAAUA ..(((((...((((...(((((.(((.......)))..)))))))))..)))))............-..((((.---------((.(((...))).)).))))..-...... ( -24.10) >DroVir_CAF1 19635 94 - 1 AUGGCGCCUCGGAUAUAGUUGUAGCUUUAAUGUAGCAGGCGACAUCCAUGUGCCUCAUGUGAGUACUGAGC--AUGCAU---------------UGGCCCCAAAAGGGCAA- ..(((((...((((...(((((.(((.......)))..)))))))))..))))).(((((.........))--)))...---------------..((((.....))))..- ( -27.80) >DroGri_CAF1 18575 93 - 1 AUGGCGCCUCGGAUAUAGUUGUAGCUUUAAUGUAGCAGGCGACAUCCAUGUGCCUCAUGUGAGUAU-GAGC--AUGGGG---------------UGCUGUGUCAACUGGAA- .((((((...((((...(((((.(((.......)))..)))))))))..(..((((((((......-..))--))))))---------------..).)))))).......- ( -33.30) >DroSec_CAF1 23243 110 - 1 AUGGCGCCUCGGAUAUAGUUGUAGCUUUAAUGUAGCAGGCGACAUCCAUGUGCCUCAUGUAAGUAA-GACCACAUGCAUACCCUAGAAAAUAGAUGUAAGUGGGA-GGUAUA .....(((((((((...(((((.(((.......)))..)))))))))...................-..((((.(((((...(((.....)))))))).))))))-)))... ( -28.60) >DroEre_CAF1 17327 99 - 1 AUGGCGCCUCGGAUAUAGUUGUAGCUUUAAUGUAGCAGGCGACAUCCAUGUGCCUCAUGUAAGUA-------------UACCCUAUAAAAUAGUUGCAAGUGGCGUAGAAAA ...(((((.(((((...(((((.(((.......)))..)))))))))..........(((((.((-------------(..........))).))))).).)))))...... ( -24.20) >DroMoj_CAF1 20678 94 - 1 AUGGCGCCUCGGAUAUAGUUGUAGCUUUAAUGUAGCAGGCGACAUCCAUGUGCCUCAUGUGAGUAUUACAA--ACGAGU---------------UGAGAUUGAAAUUGAAA- ..(((((...((((...(((((.(((.......)))..)))))))))..)))))(((..(.(((...((..--....))---------------....))).)...)))..- ( -19.40) >consensus AUGGCGCCUCGGAUAUAGUUGUAGCUUUAAUGUAGCAGGCGACAUCCAUGUGCCUCAUGUAAGUAA_GACC__AUG__U_______________UGCAAGUGGAA_GGAAA_ ..(((((...((((...(((((.(((.......)))..)))))))))..))))).......................................................... (-18.00 = -18.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:09 2006