Locus 6532

Sequence ID X_DroMel_CAF1
Location 16,355,704 – 16,355,800
Length 96
Max. P 0.951834
window10665

overview

Window 5

Location 16,355,704 – 16,355,800
Length 96
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 76.05
Mean single sequence MFE -23.88
Consensus MFE -15.80
Energy contribution -15.80
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.86
Structure conservation index 0.66
SVM decision value 1.42
SVM RNA-class probability 0.951834
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16355704 96 - 22224390
UUGCAUACUGUAUGAAACAUGAG---UAA--------CAUCUUCAUUUUCUUCUCUUGCAGGCCUUGGAAAUCUAAGGCUCUCAUCGUUGGCCGCAUAGACAAUGAC
.((((....(...((((.(((((---...--------....)))))))))..)...))))((((((((....))))))))....((((((..(.....).)))))). ( -22.90)
>DroPse_CAF1 18972 96 - 1
UUACUUACU--------AAUGAC---CGACAUCGAUUUAUGUUUCUUUCGAUUUGUUGCAGGCCUUGGAAAUCUAAGGCUCUCAUCGUUGGCCGCAUAGACAAUGAC
.......((--------(.((.(---(((((((((............)))))..(.((..((((((((....))))))))..)).))))))...)))))........ ( -23.70)
>DroSec_CAF1 22954 99 - 1
UUGCGUACUGUACUGUACAUGAGACAUAA--------UAUCUUCAUUUUGCUCUCUUGCAGGCCUUGGAAAUCUAAGGCUCUCAUCGUUGGCCGCAUAGACAAUGAC
....((((......)))).(((((.....--------..........((((......))))(((((((....))))))))))))((((((..(.....).)))))). ( -27.40)
>DroSim_CAF1 17407 99 - 1
UUGCGUACUGUACUGUACACGAGACAUAA--------UAUCUUCCUUUUGUUCUCUUGCAGGCCUUGGAAAUCUAAGGCUCUCAUCGUUGGCCGCAUAGACAAUGAC
.(((((((......))))..((((.((((--------..........))))))))..)))((((((((....))))))))....((((((..(.....).)))))). ( -26.60)
>DroEre_CAF1 17060 96 - 1
CUGCAUAUUGUCUGAAACAUGAC---UAA--------CAGCUACCCUCUGUUCUUUUGCAGGCCUUGGAAAUCUAAGGCUCUCAUCGUUGGCCGCAUAGACAAUGAC
.....(((((((((.....((.(---(((--------(.........((((......))))(((((((....))))))).......))))).))..))))))))).. ( -26.90)
>DroYak_CAF1 16369 77 - 1
-------------------UUAG---UAA--------UAUUUUCCCUCUAUUCUUUCACAGGCCUUGGAAAUCUAAGGCUCUCAUCGUUGGCCGCAUAGACAAUGAC
-------------------....---...--------.......................((((((((....))))))))....((((((..(.....).)))))). ( -15.80)
>consensus
UUGCAUACUGUA____ACAUGAG___UAA________UAUCUUCCUUUUGUUCUCUUGCAGGCCUUGGAAAUCUAAGGCUCUCAUCGUUGGCCGCAUAGACAAUGAC
............................................................((((((((....))))))))....((((((..(.....).)))))). (-15.80 = -15.80 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:08 2006