| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,355,196 – 16,355,291 |
| Length | 95 |
| Max. P | 0.585449 |
| Location | 16,355,196 – 16,355,291 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 66.22 |
| Mean single sequence MFE | -9.22 |
| Consensus MFE | -5.01 |
| Energy contribution | -5.73 |
| Covariance contribution | 0.72 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.28 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.585449 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16355196 95 - 22224390 UAUGUUCGUGCUUCAACUUAAGCCUGAACGUCUAUUUU-AUAUAAUAUACA-UAUAUA--A--CAAAUACUCGAAUAUGU-------UC--UACCU--ACUAACCCCAUGCA .(((((((.((((......)))).))))))).....((-(((((.......-))))))--)--.................-------..--.....--.............. ( -11.00) >DroPse_CAF1 18411 100 - 1 UUUGUUCGUGCUUCAACUUAAACCUGAUCGUCUAUUAU-ACGUAC-AUACAUUAUAUACUCCAUAUAUACUCGAAUAUCU-------ACCCGAAAU--ACUAUGCCAUUC-C ..(((((((((.(((.........)))..((.......-))))))-......((((((.....))))))...)))))...-------.........--............-. ( -6.00) >DroGri_CAF1 17925 94 - 1 UUUGUUCGUGCUUAAACGUCUA-UUGAAUAUGUACCUU-AAAUAG---CUA-UUCAAA--A--CAUAUACCCAUAUUCCCACAUAUCUC--UACUAAUACUUAAC-U----- ..(((((((......)))....-(((((((.((.....-.....)---)))-))))))--)--))........................--..............-.----- ( -6.20) >DroSim_CAF1 16902 93 - 1 UAUGUUCGUGCUUCAACUUAAGCCUGAACGUCUAUUUU-AUAUAAUAUACA-UAUAUA--A--CAAAUACUCGAAUAUGU-------UC--UACUU--ACUAAC--CAUACA .(((((((.((((......)))).))))))).....((-(((((.......-))))))--)--.................-------..--.....--......--...... ( -11.00) >DroEre_CAF1 16559 91 - 1 UUUGUUCGUGCUUCAACUUAAGCCUGAACGUCUAUUUU-AUAUAAUAUA-----UAUA--C--CAAAUACUCGAAUAUGU-------UC--UACUU--ACUAACCCAAUACA ...(((((.((((......)))).)))))(..((((((-(((((...))-----))))--.--.)))))..)........-------..--.....--.............. ( -10.00) >DroAna_CAF1 18415 81 - 1 UUUGUUCGUGCUUCAACUUAAGCCUGAACGUCUAUUUUUACCAACUAAACA-UAUAU---------AUACUUU-AUAUAU-------CC--UACUA--ACUAC--------- ...(((((.((((......)))).))))).....................(-(((((---------(.....)-))))))-------..--.....--.....--------- ( -11.10) >consensus UUUGUUCGUGCUUCAACUUAAGCCUGAACGUCUAUUUU_AUAUAAUAUACA_UAUAUA__A__CAAAUACUCGAAUAUGU_______UC__UACUU__ACUAACC_AAU__A ..((((((.((((......)))).)))))).................................................................................. ( -5.01 = -5.73 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:07 2006