Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,831,895 – 1,832,006 |
Length | 111 |
Max. P | 0.666800 |
Location | 1,831,895 – 1,832,006 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 92.22 |
Mean single sequence MFE | -28.11 |
Consensus MFE | -21.98 |
Energy contribution | -21.85 |
Covariance contribution | -0.13 |
Combinations/Pair | 1.09 |
Mean z-score | -1.84 |
Structure conservation index | 0.78 |
SVM decision value | 0.28 |
SVM RNA-class probability | 0.666800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1831895 111 - 22224390 UCAAUUCUCAUCCAUGCCUCCCCACUUGCAUUUUCUAUUGAUGCGCCUUUUCGGGCCUUUCCUCGCUUUUCAGGCACACGGACAGUCCCUGGGUUUC-----CCAUGUGUGGAAAU ....(((.((..((((....((((...(((((.......)))))........(((.((.(((..(((.....)))....))).)).)))))))....-----.))))..))))).. ( -28.40) >DroSec_CAF1 32465 111 - 1 UCAAUUCUCAUCCAUGCCUCGCCACUUGCAUUUUCUAUUGAUGCGCCUUUUCUGGUCGUUCCUCGCUUUUCAGGCGCACGGACAGUCCCUGGGUUUC-----CCAUGUGUGGAAAU ..........(((((((..........(((((.......)))))((((...(((..(((....((((.....)))).)))..))).....))))...-----....)))))))... ( -27.10) >DroSim_CAF1 31612 111 - 1 UCAAUUCUCAUCCAUGCCUCCCCACUUGCAUUUUCUAUUGAUGCGCCUUUUCUGGCCGUUCCUCGCUUUUCAGGCACACGGACAGUCCCUAGGUUUC-----CCAUGUGUGGAAAU ..........(((((((..........(((((.......)))))((((...(((.((((.(((........)))...)))).))).....))))...-----....)))))))... ( -26.10) >DroEre_CAF1 32058 116 - 1 CCAUUUCUCAUCCAUGCCUCCCCACUUGCAUUUUCUAUUGAUGCGCCUUUUCGGGCUUUUCCUCGCUUUUCAGGCACACAGGCAGUGCCUGGGUUUCCAGUUCCAUGUGUGGAAAU ...............((((.......((((((.......)))))).......)))).(((((.(((....(((((((.......)))))))((.........))..))).))))). ( -30.84) >consensus UCAAUUCUCAUCCAUGCCUCCCCACUUGCAUUUUCUAUUGAUGCGCCUUUUCGGGCCGUUCCUCGCUUUUCAGGCACACGGACAGUCCCUGGGUUUC_____CCAUGUGUGGAAAU ..........(((((((..........(((((.......)))))(((......)))............((((((.((.......)).)))))).............)))))))... (-21.98 = -21.85 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:50:22 2006