| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 16,352,308 – 16,352,399 |
| Length | 91 |
| Max. P | 0.966487 |
| Location | 16,352,308 – 16,352,399 |
|---|---|
| Length | 91 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 96.74 |
| Mean single sequence MFE | -14.47 |
| Consensus MFE | -13.80 |
| Energy contribution | -13.80 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.95 |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.966487 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 16352308 91 - 22224390 AGACC---CCCCGUCCCACCACCACACACACUGGUGUGCCCCCCAGAUUCAAUAUAAAUGUAUCUAUAUAUUGCCAAUUUCGUACCCAGUAUCU .(((.---....)))..............(((((.((((.....((((((((((((..........)))))))..))))).))))))))).... ( -13.80) >DroSec_CAF1 19698 89 - 1 AGACC---CCCCGUCCCACCACCACACACACUGGUGUGCC--CCAGAUUCAAUAUAAAUGUAUCUAUAUAUUGCCAAUUUCGUACCCAGUAUCU .(((.---....)))..............(((((.((((.--..((((((((((((..........)))))))..))))).))))))))).... ( -15.10) >DroSim_CAF1 14307 89 - 1 AGACC----CCCGUCCCACCACCACACACACUGGUGUGCCC-CCAGAUUCAAUAUAAAUGUAUCUAUAUAUUGCCAAUUUCGUACCCAGUAUCU .(((.----...)))..............(((((.((((..-..((((((((((((..........)))))))..))))).))))))))).... ( -14.50) >DroEre_CAF1 13710 93 - 1 AGACCCUCCCCCGUCCCACCACCACACACACUGGUGUGCCC-CCAGAUUCAAUAUAAAUGUAUCUAUAUAUUGCCAAUUUCGUACCCAGUAUCU .(((........)))..............(((((.((((..-..((((((((((((..........)))))))..))))).))))))))).... ( -14.50) >consensus AGACC___CCCCGUCCCACCACCACACACACUGGUGUGCCC_CCAGAUUCAAUAUAAAUGUAUCUAUAUAUUGCCAAUUUCGUACCCAGUAUCU .(((........)))..............(((((.((((.....((((((((((((..........)))))))..))))).))))))))).... (-13.80 = -13.80 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:04 2006