Locus 6527

Sequence ID X_DroMel_CAF1
Location 16,350,685 – 16,350,804
Length 119
Max. P 0.699413
window10657

overview

Window 7

Location 16,350,685 – 16,350,804
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.92
Mean single sequence MFE -26.88
Consensus MFE -25.11
Energy contribution -25.93
Covariance contribution 0.81
Combinations/Pair 1.04
Mean z-score -1.40
Structure conservation index 0.93
SVM decision value 0.35
SVM RNA-class probability 0.699413
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16350685 119 - 22224390
AGUAAAUCAAAGUAUCUCAUCCAAGGACAGCCACAGCCUGAUUCCUUCGGUUGCGUAUCGAAGCUAGGGCCAU-AAAAUGGCCCACCUCAUAUAUAUUGCUGGGACUAAAAACCAAAACC
...................(((..((....)).((((.......(((((((.....)))))))...(((((((-...)))))))..............)))))))............... ( -28.40)
>DroSec_CAF1 18108 118 - 1
AGUAACUCAAAGUAUCUCAUCCAAGGACAGCCACAGCCUGAUGCCUUCGGUUGCGUAUCGAAGCUAGGGCCAUCAAAAUGGCCCACCUCAUA--UAUUGCUGGGACUAAAAACCAAAACC
...................(((..((....)).((((.....((.((((((.....))))))))..(((((((....)))))))........--....)))))))............... ( -29.30)
>DroSim_CAF1 12154 118 - 1
AGUAACUCAAAGUAUCUCAUCCAAGGACAGCCACAGCCUGAUGCCUUCGGUUGCGUAUCGAAGCUAGGGCCAUCAAAAUGGCCCACCUCAUA--UAUUGCUGGGACUAAAAACCAAAACC
...................(((..((....)).((((.....((.((((((.....))))))))..(((((((....)))))))........--....)))))))............... ( -29.30)
>DroEre_CAF1 12260 104 - 1
AGUAAC----------UCAUCCAAGGACAGUCACAGCCUGAUUCCUUCGGUUGCGUAUCGAAGCUAGGGCCAUAAAA----CCCACCUCAAA--UAUUGCUGGGACCUAAAACCAAAACC
......----------.......(((.........((((.....(((((((.....)))))))...)))).......----((((.(.....--....).)))).)))............ ( -20.50)
>consensus
AGUAACUCAAAGUAUCUCAUCCAAGGACAGCCACAGCCUGAUGCCUUCGGUUGCGUAUCGAAGCUAGGGCCAUCAAAAUGGCCCACCUCAUA__UAUUGCUGGGACUAAAAACCAAAACC
...................(((..((....)).((((.......(((((((.....)))))))...(((((((....)))))))..............)))))))............... (-25.11 = -25.93 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:16:01 2006