Locus 6524

Sequence ID	X_DroMel_CAF1
Location	16,347,974 – 16,348,094
Length	120
Max. P	0.991920

overview

Window 1

Location	16,347,974 – 16,348,094
Length	120
Sequences	6
Columns	120
Reading direction	forward
Mean pairwise identity	97.83
Mean single sequence MFE	-43.10
Consensus MFE	-39.90
Energy contribution	-40.23
Covariance contribution	0.33
Combinations/Pair	1.00
Mean z-score	-0.90
Structure conservation index	0.93
SVM decision value	-0.07
SVM RNA-class probability	0.500000
Prediction	OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16347974 120 + 22224390
GCUGUAGUAGGGAUCGAUAUCCUCGAGAGGAGUGGAGGCCAAUUCCGGCGGGAAGCUGCCCUGCAAUCGAACAGGUAUUGGCACACCCUGUUCAAGUGUAGGAUCCGGUUGUGGACCUUC
(((.(..(..((((....))))..)...).)))((((((((...(((((((....))))((((((...(((((((...........)))))))...))))))...)))...))).))))) ( -42.70)
>DroPse_CAF1 10792 120 + 1
GCUGUAGAAGGGAUCGAUAUCCUCGAGAGGAGUGGAGGCCAAUUCCGGAGGGAAGCUGCCCUGCAGUCGAACAGGUAUUGGCACACCCUGUUCAAGUGUAGGAUCCGGUUGUGGACCUUC
......(((((..((.((.((((....)))))).))..(((...(((((((....))..((((((.(.(((((((...........))))))).).)))))).)))))...))).))))) ( -43.90)
>DroGri_CAF1 9942 120 + 1
GCUGUAGAAUGGAUCGAUAUCCUCGAGAGGAGUGGAGGCCAACUCCGGCGGGAAGCUGCCCUGCAAUCGAACAGGUAUUGGCACACCCUGUUCAAGUGUAGGAUCCGGUUGUGGACCUUC
.(..(((..((((((....((((....))))..((((.....))))(((((....)))))(((((...(((((((...........)))))))...))))))))))).)))..)...... ( -43.70)
>DroWil_CAF1 11822 120 + 1
GCUGUAGUAUGGAUCGAUAUCCUCGAGAGGAGUGGAGGCCAAUUCCGGCGGGAAGCUGCCCUGCAAUCGAACAGGUAUUGGCACACCCUGUUCAAGUGUAGGAUCCGGUUGUGGACCUUC
...................((((....))))..((((((((...(((((((....))))((((((...(((((((...........)))))))...))))))...)))...))).))))) ( -42.20)
>DroMoj_CAF1 10198 120 + 1
GCUGUAGUAUGGAUCGAUAUCCUCGAGAGGAGUGGAGGCCAAUUCCGGCGGGAAGCUGCCCUGCAAUCGAACAGGUAUUGGCACACCCUGUUCAAGUGUAGGAUCCGGUUGUGGACCUUC
...................((((....))))..((((((((...(((((((....))))((((((...(((((((...........)))))))...))))))...)))...))).))))) ( -42.20)
>DroPer_CAF1 10946 120 + 1
GCUGUAGAAGGGAUCGAUAUCCUCGAGAGGAGUGGAGGCCAAUUCCGGAGGGAAGCUGCCCUGCAGUCGAACAGGUAUUGGCACACCCUGUUCAAGUGUAGGAUCCGGUUGUGGACCUUC
......(((((..((.((.((((....)))))).))..(((...(((((((....))..((((((.(.(((((((...........))))))).).)))))).)))))...))).))))) ( -43.90)
>consensus
GCUGUAGAAGGGAUCGAUAUCCUCGAGAGGAGUGGAGGCCAAUUCCGGCGGGAAGCUGCCCUGCAAUCGAACAGGUAUUGGCACACCCUGUUCAAGUGUAGGAUCCGGUUGUGGACCUUC
...................((((....))))..((((((((...(((((((....))))((((((...(((((((...........)))))))...))))))...)))...))).))))) (-39.90 = -40.23 +   0.33)

alignment

secondary structure

dotplot

Window 2

Location	16,347,974 – 16,348,094
Length	120
Sequences	6
Columns	120
Reading direction	reverse
Mean pairwise identity	97.83
Mean single sequence MFE	-37.53
Consensus MFE	-37.04
Energy contribution	-36.90
Covariance contribution	-0.14
Combinations/Pair	1.03
Mean z-score	-1.36
Structure conservation index	0.99
SVM decision value	2.30
SVM RNA-class probability	0.991920
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16347974 120 - 22224390
GAAGGUCCACAACCGGAUCCUACACUUGAACAGGGUGUGCCAAUACCUGUUCGAUUGCAGGGCAGCUUCCCGCCGGAAUUGGCCUCCACUCCUCUCGAGGAUAUCGAUCCCUACUACAGC
...(((.....)))(((((.((..(((((..((((((.((((((.(((((......)))))......(((....)))))))))...))).))).)))))..))..))))).......... ( -36.40)
>DroPse_CAF1 10792 120 - 1
GAAGGUCCACAACCGGAUCCUACACUUGAACAGGGUGUGCCAAUACCUGUUCGACUGCAGGGCAGCUUCCCUCCGGAAUUGGCCUCCACUCCUCUCGAGGAUAUCGAUCCCUUCUACAGC
(((((.(((...(((((((((.((.(((((((((.(((....)))))))))))).)).)))).........)))))...))).......((((....))))........)))))...... ( -37.10)
>DroGri_CAF1 9942 120 - 1
GAAGGUCCACAACCGGAUCCUACACUUGAACAGGGUGUGCCAAUACCUGUUCGAUUGCAGGGCAGCUUCCCGCCGGAGUUGGCCUCCACUCCUCUCGAGGAUAUCGAUCCAUUCUACAGC
((((((.....)))(((((......(((((((((.(((....)))))))))))).((.(((.(((((((.....))))))).))).)).((((....))))....))))).)))...... ( -40.00)
>DroWil_CAF1 11822 120 - 1
GAAGGUCCACAACCGGAUCCUACACUUGAACAGGGUGUGCCAAUACCUGUUCGAUUGCAGGGCAGCUUCCCGCCGGAAUUGGCCUCCACUCCUCUCGAGGAUAUCGAUCCAUACUACAGC
...(((.....)))(((((.((..(((((..((((((.((((((.(((((......)))))......(((....)))))))))...))).))).)))))..))..))))).......... ( -37.30)
>DroMoj_CAF1 10198 120 - 1
GAAGGUCCACAACCGGAUCCUACACUUGAACAGGGUGUGCCAAUACCUGUUCGAUUGCAGGGCAGCUUCCCGCCGGAAUUGGCCUCCACUCCUCUCGAGGAUAUCGAUCCAUACUACAGC
...(((.....)))(((((.((..(((((..((((((.((((((.(((((......)))))......(((....)))))))))...))).))).)))))..))..))))).......... ( -37.30)
>DroPer_CAF1 10946 120 - 1
GAAGGUCCACAACCGGAUCCUACACUUGAACAGGGUGUGCCAAUACCUGUUCGACUGCAGGGCAGCUUCCCUCCGGAAUUGGCCUCCACUCCUCUCGAGGAUAUCGAUCCCUUCUACAGC
(((((.(((...(((((((((.((.(((((((((.(((....)))))))))))).)).)))).........)))))...))).......((((....))))........)))))...... ( -37.10)
>consensus
GAAGGUCCACAACCGGAUCCUACACUUGAACAGGGUGUGCCAAUACCUGUUCGAUUGCAGGGCAGCUUCCCGCCGGAAUUGGCCUCCACUCCUCUCGAGGAUAUCGAUCCAUACUACAGC
...(((.....)))(((((.((..(((((..((((((.((((((.(((((......)))))......(((....)))))))))...))).))).)))))..))..))))).......... (-37.04 = -36.90 +  -0.14)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:57 2006