Locus 6523

Sequence ID X_DroMel_CAF1
Location 16,347,696 – 16,347,816
Length 120
Max. P 0.961444
window10650

overview

Window 0

Location 16,347,696 – 16,347,816
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 95.72
Mean single sequence MFE -23.19
Consensus MFE -21.98
Energy contribution -22.48
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.32
Structure conservation index 0.95
SVM decision value 1.53
SVM RNA-class probability 0.961444
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16347696 120 - 22224390
UUCUGCAUCAAAAGCAAUGUGGAUGCUCGAUCCAUUCAAUCCGAUACGUCGUGUGGCCAUUUACAUUCUAGUGCAUCCAUUAUUUUCCCUAUUCAUCAUCACCACAAUUCUCGUCAACUG
...(((.......)))..((((((((.((((....((.....))...)))((((((....))))))....).))))))))........................................ ( -17.10)
>DroVir_CAF1 10016 120 - 1
UUCUGCAUCAAAAGCAAUGUGGCUGCUCGAUCCAUUCAAUCCGAUACGUCGUGUGGCCAUUUACAUUUUAGUGCAUCCAUUAUUUUCGUUAUUUAUCAUUACCACCAUUCUCGUGAACUG
...(((((.((((.....(((((..(.((((....((.....))...)))).)..))))).....)))).)))))...........................(((.......)))..... ( -24.80)
>DroGri_CAF1 9615 120 - 1
UUCUGCAUCAAAAGCAAUGUGGCUGCUCGAUCCAUUCAAUCCGAUACGUCGUGUGGCCAUUUACAUUUUAGUGCAUCCAUUAUUUUCGUUAUUUAUCAUUACCACCAUUCUCGUGAACUG
...(((((.((((.....(((((..(.((((....((.....))...)))).)..))))).....)))).)))))...........................(((.......)))..... ( -24.80)
>DroWil_CAF1 11549 120 - 1
UUCUGCAUCAAAAGCAAUGUGGCUGCUCGAUCCAUUCAAUCCGAUACGUCGUGUGGCCAUUUAUAUUUUAGUGCAUCCAUUAUUUUCGUUAUUUAUCAUAACCACUAUUCUCGUGAACUG
...(((((.((((.....(((((..(.((((....((.....))...)))).)..))))).....)))).)))))............(((((.....)))))(((.......)))..... ( -26.40)
>DroMoj_CAF1 9892 120 - 1
UUCUGCAUCAAAAGCAAUGUGGCUGCUCGAUCCAUUCAAUCCGAUACGUCGUGUGGCCAUUUACAUUUUAGUGCAUCCAUUAUUUUCGUUAUUUAUCAUUACCACCAUUCUCGUGAACUG
...(((((.((((.....(((((..(.((((....((.....))...)))).)..))))).....)))).)))))...........................(((.......)))..... ( -24.80)
>DroAna_CAF1 10114 120 - 1
UUCUGCAUCAAAAGCAAUGUGGCUGCUCGAUCCAUUCAAUCCGAUACGUCGUGUGGCCAUUUACAUUCUAGUGCAUCCCUUAUUUUCCCUAUUCAUCAUCACCACAAUUCUCGUCAACUG
...(((((..........(((((..(.((((....((.....))...)))).)..)))))..........)))))............................................. ( -21.25)
>consensus
UUCUGCAUCAAAAGCAAUGUGGCUGCUCGAUCCAUUCAAUCCGAUACGUCGUGUGGCCAUUUACAUUUUAGUGCAUCCAUUAUUUUCGUUAUUUAUCAUUACCACCAUUCUCGUGAACUG
...(((((.((((.....((((((((.((((....((.....))...)))).)))))))).....)))).)))))............................................. (-21.98 = -22.48 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:55 2006