Locus 6522

Sequence ID X_DroMel_CAF1
Location 16,343,505 – 16,343,625
Length 120
Max. P 0.961015
window10649

overview

Window 9

Location 16,343,505 – 16,343,625
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 100.00
Mean single sequence MFE -31.50
Consensus MFE -31.50
Energy contribution -31.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.12
Structure conservation index 1.00
SVM decision value 1.52
SVM RNA-class probability 0.961015
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 16343505 120 - 22224390
AUCUACACAUUUGAAUCAGCUGUUAAAGUGAUGGCACGAGGUUUCAUUUUAUGCCCGUUUACGUAUCUUAGAGAUGCAUGGAAUUGGCUGGACUUCGUAGUAAUAGCUUUAGCGUGAGUU
...............(((..(((((((((....(((((((((((........(((.((((..(((((.....)))))...)))).))).))))))))).))....))))))))))))... ( -31.50)
>DroWil_CAF1 6685 120 - 1
AUCUACACAUUUGAAUCAGCUGUUAAAGUGAUGGCACGAGGUUUCAUUUUAUGCCCGUUUACGUAUCUUAGAGAUGCAUGGAAUUGGCUGGACUUCGUAGUAAUAGCUUUAGCGUGAGUU
...............(((..(((((((((....(((((((((((........(((.((((..(((((.....)))))...)))).))).))))))))).))....))))))))))))... ( -31.50)
>DroYak_CAF1 6327 120 - 1
AUCUACACAUUUGAAUCAGCUGUUAAAGUGAUGGCACGAGGUUUCAUUUUAUGCCCGUUUACGUAUCUUAGAGAUGCAUGGAAUUGGCUGGACUUCGUAGUAAUAGCUUUAGCGUGAGUU
...............(((..(((((((((....(((((((((((........(((.((((..(((((.....)))))...)))).))).))))))))).))....))))))))))))... ( -31.50)
>DroMoj_CAF1 5211 120 - 1
AUCUACACAUUUGAAUCAGCUGUUAAAGUGAUGGCACGAGGUUUCAUUUUAUGCCCGUUUACGUAUCUUAGAGAUGCAUGGAAUUGGCUGGACUUCGUAGUAAUAGCUUUAGCGUGAGUU
...............(((..(((((((((....(((((((((((........(((.((((..(((((.....)))))...)))).))).))))))))).))....))))))))))))... ( -31.50)
>DroAna_CAF1 6452 120 - 1
AUCUACACAUUUGAAUCAGCUGUUAAAGUGAUGGCACGAGGUUUCAUUUUAUGCCCGUUUACGUAUCUUAGAGAUGCAUGGAAUUGGCUGGACUUCGUAGUAAUAGCUUUAGCGUGAGUU
...............(((..(((((((((....(((((((((((........(((.((((..(((((.....)))))...)))).))).))))))))).))....))))))))))))... ( -31.50)
>DroPer_CAF1 5711 120 - 1
AUCUACACAUUUGAAUCAGCUGUUAAAGUGAUGGCACGAGGUUUCAUUUUAUGCCCGUUUACGUAUCUUAGAGAUGCAUGGAAUUGGCUGGACUUCGUAGUAAUAGCUUUAGCGUGAGUU
...............(((..(((((((((....(((((((((((........(((.((((..(((((.....)))))...)))).))).))))))))).))....))))))))))))... ( -31.50)
>consensus
AUCUACACAUUUGAAUCAGCUGUUAAAGUGAUGGCACGAGGUUUCAUUUUAUGCCCGUUUACGUAUCUUAGAGAUGCAUGGAAUUGGCUGGACUUCGUAGUAAUAGCUUUAGCGUGAGUU
...............(((..(((((((((....(((((((((((........(((.((((..(((((.....)))))...)))).))).))))))))).))....))))))))))))... (-31.50 = -31.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:15:54 2006